CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75202	Soybean	plastid	95.04	95.04
VIT_01s0010g00920.t01	Wine grape	mitochondrion	75.87	75.25
Solyc05g010240.2.1	Tomato	plastid	66.61	74.49
PGSC0003DMT400064673	Potato	cytosol	53.72	72.06
GSMUA_Achr9P18480_001	Banana	plastid	66.61	68.19
CDY20555	Canola	plastid	67.93	67.71
CDY66193	Canola	plastid	67.93	67.71
Bra012462.1-P	Field mustard	plastid	67.6	67.38
TraesCS2D01G310000.3	Wheat	plastid	64.13	66.21
Os04t0443900-01	Rice	plastid	64.3	66.16
AT1G26230.1	Thale cress	plastid	66.78	66.12
Zm00001d028409_P001	Maize	plastid	63.64	65.48
TraesCS2B01G328500.3	Wheat	plastid	63.8	65.2
HORVU2Hr1G077410.18	Barley	plastid	63.14	64.31
KRH43861	Soybean	plastid	62.48	63.85
KRH13605	Soybean	nucleus	62.31	63.79
TraesCS2A01G311700.1	Wheat	plastid	63.47	59.26
KRH25068	Soybean	nucleus	42.15	43.66
KRG90277	Soybean	mitochondrion	40.17	42.26
KRH33513	Soybean	mitochondrion	39.67	41.74
KRH30612	Soybean	endoplasmic reticulum	40.17	40.98
KRH34594	Soybean	mitochondrion	38.84	40.73
KRG92192	Soybean	mitochondrion	38.68	40.7
KRH47114	Soybean	mitochondrion	37.36	39.37
KRH44140	Soybean	mitochondrion	36.69	38.68
KRH50415	Soybean	plastid	37.02	38.16
KRG89369	Soybean	plastid	36.53	37.52
KRH01342	Soybean	cytosol	8.26	31.25

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	EntrezGene:100785937	MapMan:19.1.7.1	Gene3D:3.30.260.10
Gene3D:3.50.7.10	EMBL:ACUP02000846	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1
EnsemblPlantsGene:GLYMA_02G126300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006457
GO:GO:0006458	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0042026
GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	UniProt:I1JEN0
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EnsemblPlants:KRH71056	ProteinID:KRH71056	ProteinID:KRH71056.1
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF81	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000294C274	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:12670653..12677305

Molecular Weight (calculated)

65764.1 Da

IEP (calculated)

9.445

GRAVY (calculated)

-0.182

Length

605 amino acids

Sequence
(BLAST)

001: MACSSFTFAN PSSIPRLRNS LSSSSISPRA MAKELYFNHD GSATKKLLAG VDMVAELLGV TLGPKGRNVV LPNKYGPPKI VNDGETVLKE IELEDPLENV
101: GVKLVRQAGA KTNDQAGDGS TTSVVLARGL IREGTKVIAA GMNPVQIARG IEKTAAALVS ELRLMSREVE DHELADVAAV SAGNDYSVGN MISEALHKVG
201: RMGVVTIETG RSTENCLEIV EGMQFDRGYL SPYFVNNRRK MTVELHNCKL LLVDKKITKT KELINILNNS AKEKYPVLIV AEGIEQEALA PVIKNKLRGA
301: LKVAAIKAPA FGERKTHYLE DIAILTGGTV IREDMGFTLE KAHKNDLGSA TKVVITKNST LIVTDGSTRE AVEKRVHQLR RLVENTVENF QKNILNERIA
401: RLSGGIAILQ VGAQTQVELK DKQLRVEDAL NATKAAIEEG VVVGGGCSLL RLSQKVDGIK KLLDNEEQQI GAEIFRRALS YPTRMIAKNA GLNGNVIIDK
501: VLSDNNMNFG YNAARDSYED LMKAGIMDPT KVVRCCIEHS ASVAKAFLTS NAVVVERKEL EPIPMPRRKS MPMPTSGNEL EPMSIPRRKP MSMPMATPGL
601: GPMGF

Best Arabidopsis Sequence Match ( AT1G26230.1 )
(BLAST)

001: MAFSQAALSA LPLSDRTFRK KPSSSSSSSP NFVLRVRAAA KEVHFNRDGS VTKKLQAGAD MVAKLLGVTL GPKGRNVVLQ NKYGPPRIVN DGETVLKEIE
101: LEDPLENVGV KLVRQAGAKT NDLAGDGSTT SIILAHGLIT EGIKVISAGT NPIQVARGIE KTTKALVLEL KSMSREIEDH ELAHVAAVSA GNDYEVGNMI
201: SNAFQQVGRT GVVTIEKGKY LVNNLEIVEG MQFNRGYLSP YFVTDRRKRE AEFHDCKLLL VDKKITNPKD MFKILDSAVK EEFPVLIVAE DIEQDALAPV
301: IRNKLKGNLK VAAIKAPAFG ERKSHCLDDL AIFTGATVIR DEMGLSLEKA GKEVLGTAKR VLVTKDSTLI VTNGFTQKAV DERVSQIKNL IENTEENFQK
401: KILNERVARL SGGIAIIQVG ALTQVELKDK QLKVEDALNA TKSAIEEGIV VGGGCALLRL ATKVDRIKET LDNTEQKIGA EIFKKALSYP IRLIAKNADT
501: NGNIVIEKVL SNKNTMYGYN AAKNQYEDLM LAGIIDPTKV VRCCLEHASS VAQTFLTSDC VVVEIKEIKP RPIINPPLPT SSPATSSMFP DRKLPRFPQI
601: MPRTRSHFPR K

Arabidopsis Description

CPN60B4Cpn60beta4 [Source:UniProtKB/TrEMBL;Acc:A0A178WH16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.