Factsheet for TraesCS2D01G310000.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G328500.3	Wheat	plastid	98.81	97.8
HORVU2Hr1G077410.18	Barley	plastid	97.27	95.96
TraesCS2A01G311700.1	Wheat	plastid	97.44	88.12
Os04t0443900-01	Rice	plastid	83.96	83.67
Zm00001d028409_P001	Maize	plastid	81.74	81.46
GSMUA_Achr9P18480_001	Banana	plastid	72.01	71.4
Solyc05g010240.2.1	Tomato	plastid	61.6	66.73
PGSC0003DMT400064673	Potato	cytosol	50.85	66.08
VIT_01s0010g00920.t01	Wine grape	mitochondrion	67.58	64.92
KRH75202	Soybean	plastid	66.72	64.63
KRH71056	Soybean	plastid	66.21	64.13
Bra012462.1-P	Field mustard	plastid	65.36	63.1
CDY20555	Canola	plastid	65.19	62.93
CDY66193	Canola	plastid	65.02	62.77
AT1G26230.1	Thale cress	plastid	65.36	62.68
TraesCS6D01G009100.1	Wheat	golgi	59.39	58.19
TraesCS7D01G032800.1	Wheat	cytosol	60.92	56.76
TraesCS6D01G031400.1	Wheat	plastid	57.68	56.52
TraesCS5D01G550700.1	Wheat	plastid	42.32	42.18
TraesCS2D01G049500.1	Wheat	golgi, plastid	40.27	40.83
TraesCS1D01G144000.1	Wheat	mitochondrion	39.08	39.9
TraesCS1D01G365800.1	Wheat	mitochondrion	37.03	37.54
TraesCS5D01G376000.1	Wheat	plastid	35.67	35.42
TraesCS4D01G305900.1	Wheat	golgi	38.4	34.19

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941
GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF81
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EnsemblPlantsGene:TraesCS2D01G310000
EnsemblPlants:TraesCS2D01G310000.3	TIGR:cd03344	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:-:398311795..398315682

Molecular Weight (calculated)

62993.7 Da

IEP (calculated)

6.720

GRAVY (calculated)

-0.002

Length

586 amino acids

Sequence
(BLAST)

001: MPLPPSPPPS LSSKPPTLPF SPKKTPPMPV YKDLHFNHDL SATKKLQAGV DLVARLVGVT LGPKGRNVVL ANKYGPPKIV NDGETVLKEI ELEDPLENLG
101: VKLVRQAGAR TNDIAGDGCT TSIILAQGLI AEGMKVLAAG MNPVQIARGI GRTADALVSE LKLMSREIED HEIAHVAAVS AGNDYAVGNM ISEAFKRVGR
201: EGLVRIENGR STVNSLEVVE GMQFERGYLS PFFVTNHANM SAEYTDCKIL LVDKIISDPR ELLRVCFSAV KEVFPLLIIA EDVEEEALAT LTRNKLSGMI
301: KVAAIKAPSF GEQKTQCLED IAIITGGTVV RDDMGYTLEE AGKEFLGSAS KVIVKKDSTL IVTDGSTLHA VEKRVAQIKG QVENSKETYQ KKILGERIAR
401: LSGAIAIIQV GAQTVIELKD KKLRIEDALN ATMAAIEEGV VVGGGCSLLR LSQKIDIIKE SLDNLEQKIG ADIFKHALSY PTTLIANNAG MSGKFVIEKV
501: LSNDNASYGY NAANGCYEDL MASGILDPSK VVRCCIEHSA VVAKSFLTSD VVIVEAQESK PVRVRPPMPP RNLIPPMPAS VSGIRV

Best Arabidopsis Sequence Match ( AT1G26230.4 )
(BLAST)

001: MVVKAGADMV AKLLGVTLGP KGRNVVLQNK YGPPRIVNDG ETVLKEIELE DPLENVGVKL VRQAGAKTND LAGDGSTTSI ILAHGLITEG IKVISAGTNP
101: IQVARGIEKT TKALVLELKS MSREIEDHEL AHVAAVSAGN DYEVGNMISN AFQQVGRTGV VTIEKGKYLV NNLEIVEGMQ FNRGYLSPYF VTDRRKREAE
201: FHDCKLLLVD KKITNPKDMF KILDSAVKEE FPVLIVAEDI EQDALAPVIR NKLKGNLKVA AIKAPAFGER KSHCLDDLAI FTGATVIRDE MGLSLEKAGK
301: EVLGTAKRVL VTKDSTLIVT NGFTQKAVDE RVSQIKNLIE NTEENFQKKI LNERVARLSG GIAIIQVGAL TQVELKDKQL KVEDALNATK SAIEEGIVVG
401: GGCALLRLAT KVDRIKETLD NTEQKIGAEI FKKALSYPIR LIAKNADTNG NIVIEKVLSN KNTMYGYNAA KNQYEDLMLA GIIDPTKVVR CCLEHASSVA
501: QTFLTSDCVV VEIKEIKPRP IINPPLPTSS PATSSMFPDR KLPRFPQIMP RTRSHFPRK

Arabidopsis Description

CPN60B4Cpn60beta4 [Source:UniProtKB/TrEMBL;Acc:A0A178WH16]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.