Factsheet for VIT_01s0010g00920.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g010240.2.1	Tomato	plastid	68.03	76.71
KRH75202	Soybean	plastid	75.74	76.36
PGSC0003DMT400064673	Potato	cytosol	56.39	76.27
KRH71056	Soybean	plastid	75.25	75.87
GSMUA_Achr9P18480_001	Banana	plastid	71.15	73.43
Bra012462.1-P	Field mustard	plastid	72.3	72.65
AT1G26230.1	Thale cress	plastid	72.62	72.5
CDY20555	Canola	plastid	72.13	72.49
CDY66193	Canola	plastid	71.97	72.32
Os04t0443900-01	Rice	plastid	66.56	69.05
TraesCS2D01G310000.3	Wheat	plastid	64.92	67.58
Zm00001d028409_P001	Maize	plastid	64.75	67.18
TraesCS2B01G328500.3	Wheat	plastid	65.08	67.06
HORVU2Hr1G077410.18	Barley	plastid	64.75	66.5
VIT_09s0002g03930.t01	Wine grape	plastid	64.59	64.7
VIT_06s0004g00240.t01	Wine grape	plastid	63.93	64.14
TraesCS2A01G311700.1	Wheat	plastid	64.75	60.96
VIT_06s0061g00270.t01	Wine grape	plastid	41.64	43.34
VIT_05s0051g00340.t01	Wine grape	mitochondrion	40.0	42.43
VIT_01s0011g01680.t01	Wine grape	plastid	40.0	41.85
VIT_09s0002g02240.t01	Wine grape	mitochondrion	36.72	40.65

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	EntrezGene:100251252	wikigene:100251252	MapMan:19.1.7.1
Gene3D:3.30.260.10	Gene3D:3.50.7.10	ProteinID:CCB51164	ProteinID:CCB51164.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
ncoils:Coil	InterPro:Cpn60/TCP-1	UniProt:F6HGG3	EMBL:FN595754	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0042026	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EntrezGene:LOC100251252
wikigene:LOC100251252	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF81
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI00021090A2
ArrayExpress:VIT_01s0010g00920	EnsemblPlantsGene:VIT_01s0010g00920	EnsemblPlants:VIT_01s0010g00920.t01	RefSeq:XP_002269341	RefSeq:XP_002269341.2	SEG:seg

Description

No Description!

Coordinates

chr1:+:16384467..16391080

Molecular Weight (calculated)

66082.8 Da

IEP (calculated)

8.702

GRAVY (calculated)

-0.070

Length

610 amino acids

Sequence
(BLAST)

001: MVSALSFSNL TLPRRSFSTT AWNPRAMAKE LYFNHDGSAT KKLQAGVDMV AELVGVTLGP KGRNVVLQNK YGPPKIVNDG ETVLKEIELE DPLENVGVKL
101: VRQAGAKTNH LAGDGSTTSV ILARGLIAEG VKVIAAGMNP IQISRGIEKT AMALVSELKL MSREVEDHEL AHVAAVSAGN DYTVGNMISD AIRQVGRRGV
201: ITIEKGKCAE NSLQIVEGMQ FDRGYLSPYF VTDRQKMMVE FHDCKLLLVD KKITNPKEMF KILDNAVKEK YPIVIVAEGI EQEALAPVIR NKLRGVLKAA
301: AIKAPAFGER KSHYLDDLAI LTGGTVISDE MGLTLEKAGK EVLGTATKVV ITKDSTLIVT DGSTQPAVEK RVSQIRGLVE NTEENFQKKI LNERIARLSG
401: GIAILQVGAQ TQVELKDKQL RIEDAVNATK AAIEEGVVVG GGCSLLRLSL KVDGIKELLD NEEQKIGAEI FKRALTYPAR LIAKNAGVND SVVIEKVLSN
501: DDFRYGYNAA IDCYEDLMAA GIMDPSKVVR CCLEHAASVA KTFLTSDAVV VDIKELDLIP RRKPMPPMSP MPPVSPLPSP GNSAISRRKP MPRMPLLPPL
601: PTSGIRPIGL

Best Arabidopsis Sequence Match ( AT1G26230.1 )
(BLAST)

001: MAFSQAALSA LPLSDRTFRK KPSSSSSSSP NFVLRVRAAA KEVHFNRDGS VTKKLQAGAD MVAKLLGVTL GPKGRNVVLQ NKYGPPRIVN DGETVLKEIE
101: LEDPLENVGV KLVRQAGAKT NDLAGDGSTT SIILAHGLIT EGIKVISAGT NPIQVARGIE KTTKALVLEL KSMSREIEDH ELAHVAAVSA GNDYEVGNMI
201: SNAFQQVGRT GVVTIEKGKY LVNNLEIVEG MQFNRGYLSP YFVTDRRKRE AEFHDCKLLL VDKKITNPKD MFKILDSAVK EEFPVLIVAE DIEQDALAPV
301: IRNKLKGNLK VAAIKAPAFG ERKSHCLDDL AIFTGATVIR DEMGLSLEKA GKEVLGTAKR VLVTKDSTLI VTNGFTQKAV DERVSQIKNL IENTEENFQK
401: KILNERVARL SGGIAIIQVG ALTQVELKDK QLKVEDALNA TKSAIEEGIV VGGGCALLRL ATKVDRIKET LDNTEQKIGA EIFKKALSYP IRLIAKNADT
501: NGNIVIEKVL SNKNTMYGYN AAKNQYEDLM LAGIIDPTKV VRCCLEHASS VAQTFLTSDC VVVEIKEIKP RPIINPPLPT SSPATSSMFP DRKLPRFPQI
601: MPRTRSHFPR K

Arabidopsis Description

CPN60B4Cpn60beta4 [Source:UniProtKB/TrEMBL;Acc:A0A178WH16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.