Factsheet for Os04t0443900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028409_P001	Maize	plastid	88.1	88.1
TraesCS2B01G328500.3	Wheat	plastid	85.03	84.46
TraesCS2D01G310000.3	Wheat	plastid	83.67	83.96
HORVU2Hr1G077410.18	Barley	plastid	83.84	83.0
TraesCS2A01G311700.1	Wheat	plastid	83.5	75.77
GSMUA_Achr9P18480_001	Banana	plastid	72.79	72.42
VIT_01s0010g00920.t01	Wine grape	mitochondrion	69.05	66.56
Solyc05g010240.2.1	Tomato	plastid	60.71	65.99
AT1G26230.1	Thale cress	plastid	67.86	65.3
PGSC0003DMT400064673	Potato	cytosol	50.0	65.19
CDY66193	Canola	plastid	67.18	65.07
Bra012462.1-P	Field mustard	plastid	67.01	64.91
CDY20555	Canola	plastid	66.84	64.74
KRH75202	Soybean	plastid	66.33	64.46
KRH71056	Soybean	plastid	66.16	64.3
Os06t0114000-02	Rice	plastid	61.05	59.73
Os02t0102900-01	Rice	plastid	59.86	58.86
Os03t0859600-01	Rice	plastid	24.32	45.83
Os12t0277500-01	Rice	plastid	41.5	42.21
Os10t0462900-01	Rice	mitochondrion	39.97	40.94
Os03t0143400-01	Rice	mitochondrion	39.12	39.86
Os03t0859700-00	Rice	extracellular, plastid	11.73	37.3
Os05t0540300-01	Rice	mitochondrion	36.56	37.01
Os09t0563300-02	Rice	plastid	36.22	36.47
Os02t0103100-01	Rice	plasma membrane, vacuole	0.0	0.0

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	EntrezGene:107275738	MapMan:19.1.7.1	Gene3D:3.30.260.10
Gene3D:3.50.7.10	UniProt:A0A0P0WAW0	ProteinID:BAS89371.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EnsemblPlantsGene:Os04g0443900	EnsemblPlants:Os04t0443900-01
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF81	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0003939089	RefSeq:XP_015633894.1
SEG:seg	:	:	:	:	:

Description

Similar to RuBisCO large subunit-binding protein subunit beta, chloroplastic. (Os04t0443900-01)

Coordinates

chr4:-:22118247..22122536

Molecular Weight (calculated)

63300.4 Da

IEP (calculated)

7.970

GRAVY (calculated)

-0.061

Length

588 amino acids

Sequence
(BLAST)

001: MSRMAAPPPP LSGTGKPPTL PFSLKKPPPM PVYKDLHFNR DLSATKKLQA GVDLVARLVG VTLGPKGRNV VLSNKYGPPK IVNDGETVLK EIELEDPLEN
101: LGVKLVRQAG ARTNDVAGDG CTTSIILAQG LIAEGMKVLA AGINPVQIAR GIEKTASALV SELRLMSREI EDHEIAHVAA VSAGDDYAVG NMISDAFKRV
201: GRKGMVRIEN GRGTENGLEI VEGMQFERGY LSPYFVTDCT NMSAEFTDCK ILLVDKKITD ASEIIRILDS AVKEDYPLLI VAEDVEEKAM ADLIKNKLKG
301: TIKVAAIKAP SFGEQMTQCL DDIAIMTGGT LVREDMGYTL EKAGKEVLGS ASKVVVGKDS TLIVTDGSTQ HVIEKRVAQI KGQIENSSER YQKKILGERI
401: ARLCGGIAII QVGAQTIIEM KDKKLRIEDA LNATKAAIEE GVVIGGGCSL LRLSMKIDRI KESLDNMEQK IGADIFKQAL SYPTALIANN AGVNGSFVIE
501: KVLLNEDSRY GYNAAKNRYE DLMAAGILDP SKVVRCCIEH AAVVAKSFLT SDVVIVEAKE GKPVRIRPPM PPKSLIPPMP ASASGIRV

Best Arabidopsis Sequence Match ( AT1G26230.1 )
(BLAST)

001: MAFSQAALSA LPLSDRTFRK KPSSSSSSSP NFVLRVRAAA KEVHFNRDGS VTKKLQAGAD MVAKLLGVTL GPKGRNVVLQ NKYGPPRIVN DGETVLKEIE
101: LEDPLENVGV KLVRQAGAKT NDLAGDGSTT SIILAHGLIT EGIKVISAGT NPIQVARGIE KTTKALVLEL KSMSREIEDH ELAHVAAVSA GNDYEVGNMI
201: SNAFQQVGRT GVVTIEKGKY LVNNLEIVEG MQFNRGYLSP YFVTDRRKRE AEFHDCKLLL VDKKITNPKD MFKILDSAVK EEFPVLIVAE DIEQDALAPV
301: IRNKLKGNLK VAAIKAPAFG ERKSHCLDDL AIFTGATVIR DEMGLSLEKA GKEVLGTAKR VLVTKDSTLI VTNGFTQKAV DERVSQIKNL IENTEENFQK
401: KILNERVARL SGGIAIIQVG ALTQVELKDK QLKVEDALNA TKSAIEEGIV VGGGCALLRL ATKVDRIKET LDNTEQKIGA EIFKKALSYP IRLIAKNADT
501: NGNIVIEKVL SNKNTMYGYN AAKNQYEDLM LAGIIDPTKV VRCCLEHASS VAQTFLTSDC VVVEIKEIKP RPIINPPLPT SSPATSSMFP DRKLPRFPQI
601: MPRTRSHFPR K

Arabidopsis Description

CPN60B4Cpn60beta4 [Source:UniProtKB/TrEMBL;Acc:A0A178WH16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.