Factsheet for Os03t0859600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68896	Canola	cytosol	82.05	75.96
TraesCS5D01G550700.1	Wheat	plastid	92.31	48.98
TraesCS5B01G563900.2	Wheat	plastid	92.31	48.98
EER90466	Sorghum	plastid	91.03	48.97
HORVU5Hr1G125130.1	Barley	plastid	91.99	48.89
TraesCS4A01G315500.2	Wheat	plastid	91.67	48.81
Zm00001d034919_P001	Maize	plastid	90.06	48.12
Bra000498.1-P	Field mustard	mitochondrion	82.05	47.85
KRH25068	Soybean	nucleus	86.22	46.06
GSMUA_AchrUn_...	Banana	plastid	84.62	45.75
GSMUA_Achr11P...	Banana	plastid	85.9	45.73
Solyc11g069790.1.1	Tomato	plastid	84.94	45.07
Os12t0277500-01	Rice	plastid	83.01	44.81
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	83.97	44.56
VIT_06s0061g00270.t01	Wine grape	plastid	83.65	44.54
Bra034383.1-P	Field mustard	plastid	83.01	44.27
CDY30514	Canola	plastid	82.69	44.1
CDX83280	Canola	plastid	82.05	43.99
Bra011985.1-P	Field mustard	plastid	81.73	43.59
CDY31190	Canola	plastid	81.73	43.52
AT2G28000.1	Thale cress	plastid	81.09	43.17
CDY04527	Canola	plastid	82.05	42.95
Solyc06g075010.2.1	Tomato	plastid	77.56	41.09
CDX77147	Canola	plastid	81.73	41.0
PGSC0003DMT400031301	Potato	plastid	77.24	40.92
KRH30612	Soybean	endoplasmic reticulum	76.28	40.13
CDX71396	Canola	plastid	61.86	36.48
Os09t0563300-02	Rice	plastid	58.65	31.34
Os06t0114000-02	Rice	plastid	50.64	26.29
Os02t0102900-01	Rice	plastid	49.04	25.59
Os03t0143400-01	Rice	mitochondrion	46.15	24.96
Os10t0462900-01	Rice	mitochondrion	45.83	24.91
Os04t0443900-01	Rice	plastid	45.83	24.32
Os05t0540300-01	Rice	mitochondrion	42.95	23.06
Os02t0103100-01	Rice	plasma membrane, vacuole	0.64	1.37
Os03t0859700-00	Rice	extracellular, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.560.10	Gene3D:3.50.7.10	MapMan:35.1	UniProt:A0A0P0W6L8	ProteinID:BAS87476.1	InterPro:Chaperonin_Cpn60_CS
InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027413	EnsemblPlantsGene:Os03g0859600	EnsemblPlants:Os03t0859600-01	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296
PANTHER:PTHR11353	PANTHER:PTHR11353:SF179	SUPFAM:SSF48592	SUPFAM:SSF52029	UniParc:UPI0000E122DC	SEG:seg

Description

chaperonin 60 alpha subunit 2RuBisCO subunit binding-protein alpha subunit, chloroplast precursor (60 kDa chaperonin alpha subunit) (CPN-60 alpha). (Os03t0859600-01)

Coordinates

chr3:-:36281400..36283271

Molecular Weight (calculated)

32906.8 Da

IEP (calculated)

5.024

GRAVY (calculated)

0.093

Length

312 amino acids

Sequence
(BLAST)

001: IIPLLEQTTQ LRAPLLIIAE DVAGEALATL VVNKLRGILN VAAIKAPGFG ERRKALLQDI AIVTGAEFQA KDLGLLVEST TVEQLGIARK VTISQSSTTI
101: IADVATKDEI QARIAQLKRE LSQTDSAYDS EKLAERIAKL SGGVAVIKVG AATETELEDR KLRIEDAKNA TFAAIEEGIV PGGGAAYVHL SKFVPAIKEK
201: LDDPEERLGA DIIQKALVAP AALIAHNAGV EGEVIVEKIK ESEWEVGYNA MADRHENLVQ AGVIDPAKVT RCALQNAASV AGMVLTTQAI VVEKPKKKAS
301: AASGAPEGSL AM

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.