Factsheet for TraesCS5D01G550700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16481623
plastid: 16595579
plastid: 18419817
mitochondrion: 21043471

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms PMID: 16481623 doi

Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan

Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G563900.2	Wheat	plastid	99.49	99.49
TraesCS4A01G315500.2	Wheat	plastid	99.15	99.49
HORVU5Hr1G125130.1	Barley	plastid	99.15	99.32
Os03t0859600-01	Rice	plastid	48.98	92.31
EER90466	Sorghum	plastid	88.61	89.83
Zm00001d034919_P001	Maize	plastid	88.1	88.7
Os03t0859700-00	Rice	extracellular, plastid	27.04	85.95
GSMUA_Achr11P...	Banana	plastid	82.82	83.11
Bra000498.1-P	Field mustard	mitochondrion	75.34	82.8
GSMUA_AchrUn_...	Banana	plastid	80.95	82.5
KRH25068	Soybean	nucleus	81.46	82.02
CDY68896	Canola	cytosol	46.77	81.6
VIT_06s0061g00270.t01	Wine grape	plastid	81.12	81.4
TraesCS2D01G049500.1	Wheat	golgi, plastid	79.25	80.62
Solyc11g069790.1.1	Tomato	plastid	80.1	80.1
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	79.59	79.59
CDX83280	Canola	plastid	78.74	79.55
Bra034383.1-P	Field mustard	plastid	79.08	79.49
CDY30514	Canola	plastid	78.91	79.32
CDY31190	Canola	plastid	78.57	78.84
Bra011985.1-P	Field mustard	plastid	78.23	78.63
CDY04527	Canola	plastid	78.57	77.52
AT2G28000.1	Thale cress	plastid	77.21	77.47
KRH30612	Soybean	endoplasmic reticulum	76.53	75.89
Solyc06g075010.2.1	Tomato	plastid	75.85	75.72
PGSC0003DMT400031301	Potato	plastid	75.34	75.21
CDX71396	Canola	plastid	67.01	74.48
CDX77147	Canola	plastid	78.74	74.44
TraesCS5D01G376000.1	Wheat	plastid	56.29	56.1
TraesCS6D01G009100.1	Wheat	golgi	48.64	47.83
TraesCS6D01G031400.1	Wheat	plastid	47.62	46.82
TraesCS7D01G032800.1	Wheat	cytosol	48.64	45.47
TraesCS1D01G144000.1	Wheat	mitochondrion	42.86	43.9
TraesCS2D01G310000.3	Wheat	plastid	42.18	42.32
TraesCS1D01G365800.1	Wheat	mitochondrion	40.14	40.83
TraesCS4D01G305900.1	Wheat	golgi	43.2	38.6

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF179	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EnsemblPlantsGene:TraesCS5D01G550700	EnsemblPlants:TraesCS5D01G550700.1	TIGR:cd03344	SEG:seg

Description

No Description!

Coordinates

chr5D:+:557035477..557038865

Molecular Weight (calculated)

61765.1 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.025

Length

588 amino acids

Sequence
(BLAST)

001: MATIPTTGSA SLLRGSAALQ RDGRSTRPSS AARPLPGRRA RSLSVVRASA KDIAFDQASR SALQAGVEKL AAAVGVTLGP RGRNVVLDEF GSPKVVNDGV
101: TIARAIELAD PMENAGAALI REVASKTNDS AGDGTTTASV LAREIIKLGL LSVTSGANPV SIKKGIDKTV QSLVEELEKK SRPVKGSGDI KAIAAISAGN
201: DDFIGTMIAE AINKVGPDGV LSIESSSSFE TTVEVEEGME IDRGYISPQF VTNSEKSVVE FENARVLVTD QKISSIKEIL PLLEQTTQLR APLLIIAEDV
301: SGEALATLVV NKLRGILNVA AIKAPGFGER RKALLQDIAI VTGAEFQAKD LGQLIEQTTV EQLGIARKVT ISGSSTTIIA DVATKDEIQA RIAQLKRELS
401: QTDSTYDSEK LAERIAKLSG GVAVIKVGAA TETELEDRKL RIEDAKNATF AAIEEGIVPG GGAAYVHLST FVPAIKEKLD DPEERLGADI IQKALVAPAS
501: LIAHNAGVEG EVIVEKIKDS EWEFGYNAMT DKHENLVEAG VIDPAKVTRC ALQNAASVAG MVLTTQAIVV EKPSKKAPAP AGMPQGMM

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.