Factsheet for TraesCS2D01G049500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	99.65	99.65
HORVU2Hr1G109400.1	Barley	cytosol	15.05	94.57
HORVU2Hr1G011340.1	Barley	cytosol	26.99	94.55
Os12t0277500-01	Rice	plastid	92.56	92.56
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	99.13	91.83
EES19317	Sorghum	plastid	89.45	89.6
Zm00001d000399_P001	Maize	plastid	89.45	88.53
GSMUA_Achr11P...	Banana	plastid	84.95	83.79
Bra000498.1-P	Field mustard	mitochondrion	76.64	82.8
GSMUA_AchrUn_...	Banana	plastid	82.18	82.32
Solyc11g069790.1.1	Tomato	plastid	83.74	82.31
VIT_06s0061g00270.t01	Wine grape	plastid	82.7	81.57
KRH25068	Soybean	nucleus	82.01	81.16
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	82.53	81.12
CDY68896	Canola	cytosol	47.23	81.01
Bra011985.1-P	Field mustard	plastid	81.49	80.51
CDX83280	Canola	plastid	80.97	80.41
AT2G28000.1	Thale cress	plastid	81.49	80.38
CDY31190	Canola	plastid	80.8	79.69
Bra034383.1-P	Field mustard	plastid	80.62	79.66
CDY30514	Canola	plastid	80.28	79.32
TraesCS5D01G550700.1	Wheat	plastid	80.62	79.25
CDY04527	Canola	plastid	81.31	78.86
CDX77147	Canola	plastid	81.31	75.56
CDX71396	Canola	plastid	69.03	75.43
KRH30612	Soybean	endoplasmic reticulum	76.64	74.7
Solyc06g075010.2.1	Tomato	plastid	76.12	74.7
PGSC0003DMT400031301	Potato	plastid	75.78	74.36
Zm00001d051252_P001	Maize	cytosol	25.26	71.22
TraesCS5D01G376000.1	Wheat	plastid	55.19	54.07
TraesCS6D01G009100.1	Wheat	golgi	47.58	45.99
TraesCS6D01G031400.1	Wheat	plastid	47.58	45.99
TraesCS7D01G032800.1	Wheat	cytosol	47.06	43.24
TraesCS1D01G144000.1	Wheat	mitochondrion	42.39	42.68
TraesCS2D01G310000.3	Wheat	plastid	40.83	40.27
TraesCS1D01G365800.1	Wheat	mitochondrion	39.97	39.97
TraesCS4D01G305900.1	Wheat	golgi	42.04	36.93

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF175	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EnsemblPlantsGene:TraesCS2D01G049500	EnsemblPlants:TraesCS2D01G049500.1	TIGR:cd03344	SEG:seg

Description

No Description!

Coordinates

chr2D:+:18230525..18234268

Molecular Weight (calculated)

61371.6 Da

IEP (calculated)

4.837

GRAVY (calculated)

-0.053

Length

578 amino acids

Sequence
(BLAST)

001: MASANAISTA SLLRSFSSQG RLRRSKNGRS SRLVVRADAK EIAFDQKSRA ALQAGVEKLA SAVGVTLGPR GRNVVLDEYG NPKVVNDGVT IARAIELANP
101: MENAGAALIR EVASKTNDSA GDGTTTACVL AREIIKLGIL SVTSGANPVS LKKGIDKTVQ GLIEELERKA RPVKGSGDIK AVASISAGND ELIGAMIADA
201: IDKVGPDGVL SIESSSSFET TVDVEEGMEI DRGYISPQFV TNLEKSIVEF ENARVLITDQ KITSIKEIIP LLEQTTQLRC PLFIVAEDIT GEALATLVVN
301: KLRGIINVAA IKAPSFGERR KAVLQDIAIV TGAEYLAKDL GLLVENATVD QLGTARKITI HQTTTTLIAD AASKDEIQAR VAQLKKELSE TDSIYDSEKL
401: AERIAKLSGG VAVIKVGATT ETELEDRQLR IEDAKNATFA AIEEGIVPGG GAAYVHLSTY VPAIKETIED HDERLGADII QKALQAPASL IANNAGVEGE
501: VVIEKIRESE WEMGYNAMTD KYENLIESGV IDPAKVTRCA LQNAASVSGM VLTTQAIVVE KPKPKPKVAE PAEGQLSV

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.