CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000399_P001	Maize	plastid	95.84	94.69
Os12t0277500-01	Rice	plastid	94.11	93.94
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	89.95	89.79
TraesCS2D01G049500.1	Wheat	golgi, plastid	89.6	89.45
HORVU2Hr1G109400.1	Barley	cytosol	13.52	84.78
GSMUA_Achr11P...	Banana	plastid	85.62	84.3
Bra000498.1-P	Field mustard	mitochondrion	77.82	83.93
HORVU2Hr1G011340.1	Barley	cytosol	23.92	83.64
GSMUA_AchrUn_...	Banana	plastid	83.19	83.19
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	89.77	83.01
VIT_06s0061g00270.t01	Wine grape	plastid	84.06	82.76
KRH25068	Soybean	nucleus	83.54	82.53
CDY68896	Canola	cytosol	48.18	82.49
Solyc11g069790.1.1	Tomato	plastid	83.36	81.8
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	83.02	81.46
CDX83280	Canola	plastid	81.98	81.27
Bra011985.1-P	Field mustard	plastid	81.98	80.85
AT2G28000.1	Thale cress	plastid	81.8	80.55
CDY31190	Canola	plastid	81.8	80.55
Bra034383.1-P	Field mustard	plastid	81.63	80.51
CDY30514	Canola	plastid	81.28	80.17
EER90466	Sorghum	plastid	79.9	79.48
CDY04527	Canola	plastid	81.8	79.19
CDX77147	Canola	plastid	82.32	76.37
KRH30612	Soybean	endoplasmic reticulum	77.99	75.89
Zm00001d051252_P001	Maize	cytosol	26.86	75.61
CDX71396	Canola	plastid	69.15	75.43
Solyc06g075010.2.1	Tomato	plastid	76.26	74.7
PGSC0003DMT400031301	Potato	plastid	75.91	74.36
EER96340	Sorghum	plastid	56.67	55.9
EER89076	Sorghum	plastid	48.53	48.36
KXG29249	Sorghum	plastid	48.87	46.69
EER94121	Sorghum	mitochondrion	42.81	42.81
KXG40202	Sorghum	cytosol	28.94	41.03
EES19881	Sorghum	mitochondrion	40.03	39.76

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EntrezGene:8061304	UniProt:C5YW53	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1
EnsemblPlants:EES19317	ProteinID:EES19317	ProteinID:EES19317.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0007005	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF175	EnsemblPlantsGene:SORBI_3009G098100
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	unigene:Sbi.14259	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI0001A88A8F	RefSeq:XP_002440887.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:36078681..36083460

Molecular Weight (calculated)

60897.0 Da

IEP (calculated)

4.788

GRAVY (calculated)

-0.003

Length

577 amino acids

Sequence
(BLAST)

001: MASANAISTA SLISPLSQGR ARRARNGRSQ RFVVRAEAKD IAFDQKSRAA LQAGVEKLAN AVGVTLGPRG RNVVLDEYGS PKVVNDGVTI ARAIELYDPM
101: ENAGAALIRE VASKTNDSAG DGTTTASVLA REIIKLGLLS VTSGANPVSL KKGIDKTVQG LIQELENKAR PVKGGGDIKA VASISAGNDE FIGSMIAEAI
201: DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NLEKSIVEFE NAKVLITDQK ISSIKEILPI LEKTTQLRAP LFIIAEDITG EALATLVVNK
301: LRGILNVAAI KAPSFGERRK AVLQDIAIVT GAEFLAKDLG LLVENATEAQ LGTARKVTIH QTTTTLIADA ASKDEIQARV AQLKKELAET DSVYDTEKLA
401: ERIAKLAGGV AVIKVGAATE TELEDRQLRI EDAKNATFAA IEEGIVPGGG TAYVHLSTVV PSIKEKIEDP DERLGADIIQ KALVAPASLI AHNAGVEGEV
501: VVEKIKDSVW EVGYNAMTDT YENLIEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVEK PKPKPQVAEP SEGSLAV

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.