CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035937_P001	Maize	plastid	98.62	98.62
Zm00001d045544_P002	Maize	plastid	98.96	95.5
Os06t0114000-02	Rice	plastid	96.72	93.18
TraesCS4A01G452700.2	Wheat	plastid	92.57	91.78
HORVU7Hr1G006490.2	Barley	cytosol	86.7	90.61
Zm00001d016540_P001	Maize	cytosol	16.06	89.42
TraesCS7A01G036200.2	Wheat	golgi	94.82	88.55
TraesCS7D01G032800.1	Wheat	cytosol	94.82	87.28
Bra001507.1-P	Field mustard	plastid	88.08	86.44
CDX82537	Canola	plastid	87.39	86.2
GSMUA_Achr3P27620_001	Banana	plastid	90.5	85.62
CDX75715	Canola	cytosol	83.07	85.44
CDX75713	Canola	plastid	86.87	84.82
GSMUA_Achr9P23240_001	Banana	plastid	89.64	84.8
AT3G13470.1	Thale cress	plastid	86.87	84.4
Zm00001d053279_P001	Maize	mitochondrion	22.8	84.08
VIT_06s0004g00240.t01	Wine grape	plastid	87.91	83.72
AT1G55490.3	Thale cress	plastid	86.7	83.67
Solyc01g028810.2.1	Tomato	plastid	86.53	83.64
PGSC0003DMT400061700	Potato	extracellular	86.53	83.64
KRH43861	Soybean	plastid	85.49	83.61
KRH13605	Soybean	nucleus	84.97	83.25
CDY08245	Canola	plastid	86.18	83.17
Zm00001d046709_P001	Maize	mitochondrion	22.45	82.8
KXG29249	Sorghum	plastid	86.01	82.45
Bra011919.1-P	Field mustard	plastid	86.53	82.4
CDY32855	Canola	plastid	84.28	82.15
VIT_09s0002g03930.t01	Wine grape	plastid	86.18	81.94
AT5G56500.2	Thale cress	plastid	84.46	81.91
Bra028922.1-P	Field mustard	plastid	83.25	81.56
CDY11918	Canola	plastid	83.07	80.84
CDY26100	Canola	plastid	86.36	79.62
Solyc03g120850.2.1	Tomato	plastid	83.07	79.5
PGSC0003DMT400006501	Potato	plastid	82.56	79.01
CDY36809	Canola	plastid	82.73	78.91
Zm00001d037526_P001	Maize	plastid	23.32	76.27
Bra030858.1-P	Field mustard	cytosol	86.7	72.86
CDX72433	Canola	endoplasmic reticulum	39.38	72.15
CDY02438	Canola	cytosol	86.18	71.59
CDY32775	Canola	cytosol	10.19	69.41
CDY23605	Canola	cytosol	50.6	67.51
CDY10557	Canola	endoplasmic reticulum, plastid	86.36	60.31
CDY56074	Canola	plastid	49.4	60.21
CDY43988	Canola	cytosol	50.95	57.39
Bra027431.1-P	Field mustard	cytosol	51.12	57.03
CDY10302	Canola	extracellular	6.39	56.92
EER90466	Sorghum	plastid	49.05	48.97
CDX86994	Canola	mitochondrion, plastid	59.07	48.72
EES19317	Sorghum	plastid	48.36	48.53
EER94121	Sorghum	mitochondrion	45.6	45.75
KXG40202	Sorghum	cytosol	31.61	44.96
EES19881	Sorghum	mitochondrion	42.31	42.17
CDY40825	Canola	endoplasmic reticulum, vacuole	15.2	41.31
EER96340	Sorghum	plastid	40.07	39.66
CDX85007	Canola	cytosol, plastid	43.87	25.3

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EntrezGene:8066904	UniProt:C5Z2S4	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1
EnsemblPlants:EER89076	ProteinID:EER89076	ProteinID:EER89076.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0007005	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF8	EnsemblPlantsGene:SORBI_3010G011200	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	unigene:Sbi.14212
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0001A899EA	RefSeq:XP_002437709.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:976735..981903

Molecular Weight (calculated)

61740.2 Da

IEP (calculated)

5.210

GRAVY (calculated)

-0.093

Length

579 amino acids

Sequence
(BLAST)

001: MASTFGATST VGLMAAPAGK NVRLQRRANF RVKAAKELYF NKDGSAIKKL QTGVNKLADL VGVTLGPKGR NVVLESKYGS PKIVNDGVTV AREVELEDPV
101: ENIGAKLVRQ AAAKTNDLAG DGTTTSVVLA QGLIAEGVKV VAAGANPVQI TRGIEKTAKA LVEELRKLSK DVEDSELADV AAVSAGNNYE IGNMIAEAMS
201: KVGRKGVVTL EEGRSSENFL YVVEGMQFDR GYISPYFVTD SEKMSAEYEN CKLLLVDKKI TNARDLINVL EEAIRGAYPI LIIAEDIEQE ALATLVVNKL
301: RGSLKIAAIK APGFGERKTQ YLDDIAILTG ATVIRDEVGL SLDKADKSVL GTAAKVVLTK ESTTIVGDGS TQEEVTKRVA QIKNLIEAAE QEYEKEKLNE
401: RIAKLAGGVA VIQVGAQTET ELKEKKLRVE DALNATKAAV EEGIVVGGGC TLLRLAAKVD AIKDTLENDE QKVGAEIVRR ALSYPLKLIA KNAGVNGSVV
501: TEKVLSNDNF KYGYNAATGQ HEDLMAAGII DPTKVVRCCL EHAASVAKTF LTSDVVVVDI KEPEAAPLAN PMDNSGYGY

Best Arabidopsis Sequence Match ( AT1G55490.5 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.