Factsheet for GSMUA_Achr9P23240_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P27620_001	Banana	plastid	94.12	94.12
Zm00001d035937_P001	Maize	plastid	85.13	89.98
EER89076	Sorghum	plastid	84.8	89.64
TraesCS6B01G012000.1	Wheat	cytosol	59.48	88.56
VIT_06s0004g00240.t01	Wine grape	plastid	87.75	88.32
Os06t0114000-02	Rice	plastid	86.27	87.85
HORVU7Hr1G006490.2	Barley	cytosol	78.92	87.18
Zm00001d045544_P002	Maize	plastid	85.46	87.17
TraesCS4A01G452700.2	Wheat	plastid	83.01	86.99
Bra001507.1-P	Field mustard	plastid	83.82	86.95
AT3G13470.1	Thale cress	plastid	84.64	86.91
HORVU4Hr1G076680.1	Barley	cytosol	28.1	86.87
CDX75713	Canola	plastid	84.15	86.85
KRH43861	Soybean	plastid	83.99	86.82
CDX82537	Canola	plastid	83.17	86.71
KRH13605	Soybean	nucleus	83.66	86.63
CDX75715	Canola	cytosol	79.58	86.5
VIT_09s0002g03930.t01	Wine grape	plastid	85.95	86.37
HORVU5Hr1G074160.1	Barley	cytosol	27.45	86.15
AT1G55490.3	Thale cress	plastid	84.31	86.0
Solyc01g028810.2.1	Tomato	plastid	83.66	85.48
PGSC0003DMT400061700	Potato	extracellular	83.66	85.48
Os02t0102900-01	Rice	plastid	83.5	85.45
TraesCS6A01G006400.1	Wheat	golgi	83.33	85.28
TraesCS6D01G009100.1	Wheat	golgi	83.17	85.12
KXG29249	Sorghum	plastid	83.99	85.1
AT5G56500.2	Thale cress	plastid	83.01	85.09
HORVU2Hr1G107410.2	Barley	cytosol	27.78	85.0
CDY08245	Canola	plastid	83.17	84.83
TraesCS6B01G011800.1	Wheat	plastid	81.86	84.49
TraesCS6B01G012100.3	Wheat	plastid	82.68	84.33
TraesCS7A01G036200.2	Wheat	golgi	85.29	84.19
Bra011919.1-P	Field mustard	plastid	83.5	84.05
CDY32855	Canola	plastid	81.21	83.67
Bra028922.1-P	Field mustard	plastid	80.72	83.59
CDY11918	Canola	plastid	80.72	83.03
TraesCS7D01G032800.1	Wheat	cytosol	85.13	82.83
Zm00001d054089_P002	Maize	plastid	82.68	82.01
Zm00001d016540_P001	Maize	cytosol	13.89	81.73
Solyc03g120850.2.1	Tomato	plastid	80.39	81.32
PGSC0003DMT400006501	Potato	plastid	80.23	81.16
CDY36809	Canola	plastid	80.39	81.05
CDY26100	Canola	plastid	83.17	81.05
TraesCS6A01G028100.1	Wheat	plastid	77.29	79.1
HORVU6Hr1G005220.3	Barley	plastid	76.96	78.76
TraesCS6D01G031400.1	Wheat	plastid	76.96	78.76
TraesCS6B01G039300.2	Wheat	plastid	76.63	78.43
GSMUA_Achr11P...	Banana	plastid	89.05	78.3
Zm00001d053279_P001	Maize	mitochondrion	19.77	77.07
Zm00001d046709_P001	Maize	mitochondrion	19.44	75.8
Bra030858.1-P	Field mustard	cytosol	83.82	74.46
GSMUA_Achr8P14600_001	Banana	plastid	31.7	73.76
CDX72433	Canola	endoplasmic reticulum	37.91	73.42
HORVU6Hr1G000180.2	Barley	plastid	77.94	73.27
CDY02438	Canola	cytosol	83.33	73.17
CDY32775	Canola	cytosol	9.97	71.76
HORVU4Hr1G066820.2	Barley	cytosol	27.12	70.64
Zm00001d037526_P001	Maize	plastid	20.26	70.06
CDY23605	Canola	cytosol	48.53	68.43
GSMUA_Achr9P18480_001	Banana	plastid	59.8	61.93
CDY56074	Canola	plastid	47.88	61.68
CDY10557	Canola	endoplasmic reticulum, plastid	83.5	61.64
CDY43988	Canola	cytosol	48.53	57.78
Bra027431.1-P	Field mustard	cytosol	48.69	57.42
CDY10302	Canola	extracellular	5.88	55.38
GSMUA_AchrUn_...	Banana	plastid	47.06	49.91
GSMUA_Achr11P...	Banana	plastid	47.55	49.66
CDX86994	Canola	mitochondrion, plastid	56.05	48.86
GSMUA_Achr10P...	Banana	mitochondrion	43.46	46.26
GSMUA_Achr1P11160_001	Banana	mitochondrion	43.3	45.85
GSMUA_Achr7P24090_001	Banana	cytosol	38.24	44.15
CDY40825	Canola	endoplasmic reticulum, vacuole	14.71	42.25
GSMUA_Achr10P...	Banana	cytosol	8.5	37.68
CDX85007	Canola	cytosol, plastid	45.1	27.49
GSMUA_Achr10P...	Banana	cytosol	41.99	20.96
Os02t0103100-01	Rice	plasma membrane, vacuole	0.33	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr9G23240_001
EnsemblPlants:GSMUA_Achr9P23240_001	EnsemblPlants:GSMUA_Achr9T23240_001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
UniProt:M0U2T3	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF96	SUPFAM:SSF48592	SUPFAM:SSF52029	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0002965913
SEG:seg	:	:	:	:	:

Description

RuBisCO large subunit-binding protein subunit beta, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G23240_001]

Coordinates

chr9:+:28157868..28165065

Molecular Weight (calculated)

65128.2 Da

IEP (calculated)

5.858

GRAVY (calculated)

-0.136

Length

612 amino acids

Sequence
(BLAST)

001: MASASYTLST LGAIASPSNF RTDKKLLASK QKLSQFSSFA SISSSSISSR RQSLGSLRRG NCKINAMAKE LYFNKDGSAI KKLQTGVNKL ADLVGVTLGP
101: KGRNVVLESK YGSPKIVNDG VTVAKEVELE DPVENIGAKL VRQAAAKTND LAGDGTTTSV VLAQGMIAEG VKVVAAGANP VQITRGIEKT AKALVSELKK
201: MSKEVEDSEL ADVAAVSAGN NYEIGNMIAE AMSKVGRKGV VTLEEGKSAE NNLYVVEGMQ FDRGYISPYF VTDSEKMTAE YENCKLLLVD KKITNARDLI
301: NVLEDAIRGG YPVVIISEDI EQEALATLVV NKLRGSLKIA ALKAPGFGER KSQYLDDIAI LTGATVIRDE VGLSLDKAGK EVLGTAAKVV LTKDSSTIVG
401: DGTTQEEVNK RVAQIKNLIE AAEQEYEKEK LNERVAKLSG GVAVIQVGAQ TETELKEKKL RVEDALNATK AAVEEGIVVG GGCTLLRLAS KVDAIKETLD
501: NDEQKVGADI VKRALSYPLK LIAKNAGVNG SVVTEKVLSN ENFKFGYNAA TGKYEDLMAA GIIDPTKVVR CCLEHAASVA KTFLTSDVVV VDIKEPETLP
601: AGNPMDNSGY GY

Best Arabidopsis Sequence Match ( AT1G55490.5 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.