Factsheet for GSMUA_Achr10P07870_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59050	Canola	cytosol	56.52	23.08
KXG40202	Sorghum	cytosol	55.07	18.67
GSMUA_Achr10P...	Banana	mitochondrion	71.01	17.04
VIT_05s0051g00340.t01	Wine grape	mitochondrion	65.94	15.83
GSMUA_Achr1P11160_001	Banana	mitochondrion	65.94	15.74
Solyc05g053470.2.1	Tomato	plastid	64.49	15.53
Os10t0462900-01	Rice	mitochondrion	64.49	15.51
CDX93002	Canola	mitochondrion	61.59	15.45
PGSC0003DMT400069855	Potato	mitochondrion	63.77	15.36
TraesCS4B01G307700.1	Wheat	mitochondrion	63.77	15.28
TraesCS4A01G409100.1	Wheat	mitochondrion	63.77	15.28
AT3G23990.1	Thale cress	mitochondrion	63.77	15.25
Os03t0143400-01	Rice	mitochondrion	63.77	15.25
KRG90277	Soybean	mitochondrion	63.04	15.13
Zm00001d032789_P001	Maize	plastid	63.04	15.1
Zm00001d014090_P002	Maize	mitochondrion	63.04	15.08
KRH33513	Soybean	mitochondrion	62.32	14.96
KRG92192	Soybean	mitochondrion	62.32	14.96
EER94121	Sorghum	mitochondrion	62.32	14.9
Bra001934.1-P	Field mustard	mitochondrion	62.32	14.9
CDX94835	Canola	mitochondrion	62.32	14.9
KRH34594	Soybean	mitochondrion	62.32	14.9
TraesCS1D01G144000.1	Wheat	mitochondrion	60.87	14.63
TraesCS1B01G162300.1	Wheat	mitochondrion	60.87	14.63
TraesCS1A01G145000.1	Wheat	mitochondrion	60.87	14.63
PGSC0003DMT400030265	Potato	mitochondrion	60.87	14.61
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	60.87	14.51
GSMUA_Achr7P24090_001	Banana	cytosol	53.62	13.96
AT2G33210.1	Thale cress	mitochondrion	57.97	13.68
HORVU4Hr1G078820.3	Barley	plastid	62.32	13.63
TraesCS4D01G305900.1	Wheat	golgi	63.77	13.37
CDY19471	Canola	mitochondrion	56.52	13.15
HORVU1Hr1G038680.8	Barley	mitochondrion	62.32	12.86
CDX84697	Canola	mitochondrion	50.72	12.43
Bra022931.1-P	Field mustard	mitochondrion	47.83	11.85
TraesCS4B01G266200.1	Wheat	cytosol	34.78	11.57
CDY17152	Canola	mitochondrion	47.83	11.5
Bra005514.1-P	Field mustard	mitochondrion	44.93	11.09
CDY66712	Canola	mitochondrion	44.2	10.12
CDY72107	Canola	mitochondrion	21.74	9.77
GSMUA_AchrUn_...	Banana	plastid	40.58	9.71
GSMUA_Achr9P18480_001	Banana	plastid	40.58	9.48
GSMUA_Achr11P...	Banana	plastid	39.13	9.22
CDY37741	Canola	mitochondrion	39.13	8.84
GSMUA_Achr3P27620_001	Banana	plastid	37.68	8.5
GSMUA_Achr9P23240_001	Banana	plastid	37.68	8.5
Bra021836.1-P	Field mustard	cytosol	23.91	7.38
GSMUA_Achr11P...	Banana	plastid	36.23	7.18
HORVU4Hr1G071510.2	Barley	cytosol	32.61	6.32
GSMUA_Achr8P14600_001	Banana	plastid	9.42	4.94
CDY59049	Canola	mitochondrion	7.25	4.59
GSMUA_Achr10P...	Banana	cytosol	35.51	4.0
CDX79518	Canola	cytosol	4.35	2.97

Protein Annotations

EnsemblPlants:GSMUA_Achr10P07870_001	EnsemblPlants:GSMUA_Achr10T07870_001	EnsemblPlantsGene:GSMUA_Achr10G07870_001	Gene3D:3.50.7.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Cpn60/TCP-1	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	PANTHER:PTHR11353
PANTHER:PTHR11353:SF85	PFAM:PF00118	SUPFAM:SSF52029	UniParc:UPI000294AC43	UniProt:M0RGB3	MapMan:35.1

Description

Chaperonin CPN60, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr10G07870_001]

Coordinates

chr10:-:17940219..17941483

Molecular Weight (calculated)

14766.2 Da

IEP (calculated)

5.910

GRAVY (calculated)

0.269

Length

138 amino acids

Sequence
(BLAST)

001: MSELQAGRLK GQSDHQRPLL IVAEDIESDA LTTLILKKLC SGIRVVFCLA PGFGVNRKAS LQDLATLTGG SVITGELGMN IGKVEFNKLG TCKKVSILKD
101: ATVILDGACD KKATEERCEQ VGALLDLFIL TISLVFES

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.