Factsheet for PGSC0003DMT400069855

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062
extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053470.2.1	Tomato	plastid	98.78	98.78
PGSC0003DMT400030265	Potato	mitochondrion	89.7	89.39
VIT_05s0051g00340.t01	Wine grape	mitochondrion	88.83	88.52
KRH33513	Soybean	mitochondrion	88.31	88.0
KRG92192	Soybean	mitochondrion	87.96	87.65
KRG90277	Soybean	mitochondrion	87.96	87.65
GSMUA_Achr10P...	Banana	mitochondrion	87.96	87.65
KRH34594	Soybean	mitochondrion	87.61	87.0
Os10t0462900-01	Rice	mitochondrion	87.09	86.93
GSMUA_Achr1P11160_001	Banana	mitochondrion	86.91	86.16
EER94121	Sorghum	mitochondrion	86.74	86.14
Zm00001d014090_P002	Maize	mitochondrion	86.39	85.79
Zm00001d032789_P001	Maize	plastid	86.21	85.76
Os03t0143400-01	Rice	mitochondrion	85.69	85.1
TraesCS1B01G162300.1	Wheat	mitochondrion	84.99	84.84
TraesCS1A01G145000.1	Wheat	mitochondrion	84.99	84.84
AT2G33210.1	Thale cress	mitochondrion	86.56	84.79
CDY72107	Canola	mitochondrion	45.38	84.69
TraesCS1D01G144000.1	Wheat	mitochondrion	84.82	84.67
CDX84697	Canola	mitochondrion	82.37	83.84
TraesCS4A01G409100.1	Wheat	mitochondrion	84.12	83.68
TraesCS4B01G307700.1	Wheat	mitochondrion	83.77	83.33
Bra022931.1-P	Field mustard	mitochondrion	80.8	83.12
Bra005514.1-P	Field mustard	mitochondrion	80.8	82.83
CDY17152	Canola	mitochondrion	82.02	81.88
CDX79518	Canola	cytosol	28.8	81.68
CDY19471	Canola	mitochondrion	84.47	81.62
KXG40202	Sorghum	cytosol	57.42	80.84
PGSC0003DMT400006642	Potato	cytosol	68.06	76.32
HORVU4Hr1G078820.3	Barley	plastid	83.94	76.23
TraesCS4D01G305900.1	Wheat	golgi	83.94	73.1
HORVU1Hr1G038680.8	Barley	mitochondrion	85.34	73.09
Bra021836.1-P	Field mustard	cytosol	50.96	65.32
GSMUA_Achr10P...	Banana	cytosol	15.36	63.77
CDY66712	Canola	mitochondrion	64.4	61.19
CDY37741	Canola	mitochondrion	63.7	59.74
TraesCS4B01G266200.1	Wheat	cytosol	39.62	54.7
PGSC0003DMT400061700	Potato	extracellular	45.72	43.74
PGSC0003DMT400006501	Potato	plastid	44.68	42.31
PGSC0003DMT400031301	Potato	plastid	42.58	41.43
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	42.41	41.33
PGSC0003DMT400064673	Potato	cytosol	31.41	39.91
PGSC0003DMT400027020	Potato	cytosol	34.9	37.31
HORVU4Hr1G071510.2	Barley	cytosol	42.41	34.13

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:102582102	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS
InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	UniProt:M1CL95	HAMAP:MF_00600	PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG401027165	PGSC:PGSC0003DMG401027165
EnsemblPlants:PGSC0003DMT400069855	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0002961AAE	RefSeq:XP_006355738.1
SEG:seg	:	:	:	:	:

Description

Chaperonin-60kD, ch60 [Source:PGSC_GENE;Acc:PGSC0003DMG401027165]

Coordinates

chr5:+:48754798..48761681

Molecular Weight (calculated)

61215.2 Da

IEP (calculated)

5.831

GRAVY (calculated)

-0.088

Length

573 amino acids

Sequence
(BLAST)

001: MYRFAAKLAS KSRVARRSTQ QVGSRLNWSR NYAAKDIKFG VEARGLMLQG VEQLADAVKV TMGPKGRNVV IEQSWGAPKV TKDGVTVAKS IEFKDKIKNV
101: GASLVKQVAN ATNDAAGDGT TCATVLTRAI FAEGCKSVAA GMNAMDLRRG ITMAVDAVVT NLKSRARMIS TSEEIAQVGT ISANGEREIG EIIARAMEQV
201: GKEGVITIQD GKTLLNDLQV VEGMKLDRGY ISPYFITNEK NQKCELDDPL ILIHEKKISS INAIVKVLEL ALKRQRPLLI VSEDVESEAL ATLILNKLRA
301: GIKVCAIKAP GFGENRKANL QDLAALTGGQ VITEELGMNI ENVELDMLGK CKKVTVSKDD TVVLDGAGEK KAIEERCEQI RSAIELSTSD YDKEKLQERL
401: ARLSGGVAVL KVGGASEIEV GEKKDRVTDA LNATKAAVEE GILPGGGVAL LYASKELDSL PTANFDQKIG VQIIQNALKT PVYTIASNAG VEGSVVVGKL
501: LEQDNPDLGY DAAKGEYVDM IKAGIIDPLK VIRTALVDAA SVSSLLTTTE AVIVELPKDE KASPAMPGGG MDY

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.