CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72107	Canola	mitochondrion	54.17	99.35
Bra022931.1-P	Field mustard	mitochondrion	97.16	98.2
CDX79518	Canola	cytosol	34.99	97.52
CDY17152	Canola	mitochondrion	95.38	93.55
CDY19471	Canola	mitochondrion	96.27	91.4
AT2G33210.1	Thale cress	mitochondrion	93.07	89.57
GSMUA_Achr10P...	Banana	mitochondrion	85.44	83.65
CDX94835	Canola	mitochondrion	85.08	83.02
CDX93002	Canola	mitochondrion	80.64	82.55
TraesCS1D01G144000.1	Wheat	mitochondrion	84.01	82.4
Os10t0462900-01	Rice	mitochondrion	84.01	82.4
PGSC0003DMT400069855	Potato	mitochondrion	83.84	82.37
GSMUA_Achr1P11160_001	Banana	mitochondrion	84.55	82.35
TraesCS1B01G162300.1	Wheat	mitochondrion	83.66	82.06
TraesCS1A01G145000.1	Wheat	mitochondrion	83.66	82.06
Solyc05g053470.2.1	Tomato	plastid	83.48	82.02
Zm00001d014090_P002	Maize	mitochondrion	83.84	81.8
Os03t0143400-01	Rice	mitochondrion	83.84	81.8
Zm00001d032789_P001	Maize	plastid	83.48	81.6
PGSC0003DMT400030265	Potato	mitochondrion	83.13	81.39
EER94121	Sorghum	mitochondrion	83.3	81.28
TraesCS4A01G409100.1	Wheat	mitochondrion	82.77	80.9
TraesCS4B01G307700.1	Wheat	mitochondrion	82.42	80.56
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	82.77	80.48
KXG40202	Sorghum	cytosol	55.42	76.66
CDY59050	Canola	cytosol	45.47	75.74
HORVU4Hr1G078820.3	Barley	plastid	82.95	74.01
CDY59049	Canola	mitochondrion	27.71	71.56
HORVU1Hr1G038680.8	Barley	mitochondrion	84.19	70.85
TraesCS4D01G305900.1	Wheat	golgi	82.59	70.67
CDY66712	Canola	mitochondrion	73.36	68.49
CDY37741	Canola	mitochondrion	73.89	68.09
CDX82514	Canola	mitochondrion	68.38	67.31
CDX75733	Canola	mitochondrion	68.03	66.96
TraesCS4B01G266200.1	Wheat	cytosol	38.01	51.57
GSMUA_Achr10P...	Banana	cytosol	12.43	50.72
CDY11918	Canola	plastid	46.0	43.53
CDY32855	Canola	plastid	45.47	43.1
CDY36809	Canola	plastid	45.47	42.17
CDX82537	Canola	plastid	43.87	42.08
CDX75713	Canola	plastid	43.87	41.65
CDX75715	Canola	cytosol	41.21	41.21
CDY08245	Canola	plastid	43.87	41.17
CDY32775	Canola	cytosol	6.04	40.0
CDY26100	Canola	plastid	44.23	39.65
CDX83280	Canola	plastid	40.5	39.18
CDY30514	Canola	plastid	40.5	38.97
CDY31190	Canola	plastid	40.5	38.91
CDY04527	Canola	plastid	41.03	38.76
CDY20555	Canola	plastid	41.74	38.72
CDY68896	Canola	cytosol	23.09	38.58
CDY66193	Canola	plastid	41.56	38.55
CDX71396	Canola	plastid	34.81	37.05
CDX77147	Canola	plastid	40.67	36.82
CDY23605	Canola	cytosol	27.71	35.94
CDY02438	Canola	cytosol	44.41	35.87
CDY02601	Canola	plastid	36.59	35.64
CDY47184	Canola	plastid	36.23	35.29
CDY31193	Canola	plastid	14.74	35.02
CDX72433	Canola	endoplasmic reticulum	19.36	34.49
CDY56074	Canola	plastid	28.77	34.11
HORVU4Hr1G071510.2	Barley	cytosol	40.67	32.16
CDY10302	Canola	extracellular	3.55	30.77
CDY10557	Canola	endoplasmic reticulum, plastid	44.41	30.16
CDY43988	Canola	cytosol	27.18	29.77
CDY40825	Canola	endoplasmic reticulum, vacuole	9.41	24.88
CDX86994	Canola	mitochondrion, plastid	30.55	24.5
CDY56079	Canola	plastid	5.15	21.64
CDX85007	Canola	cytosol, plastid	25.75	14.44

Protein Annotations

Gene3D:1.10.560.10	Gene3D:3.30.260.10	Gene3D:3.50.7.10	MapMan:35.1	GO:A0A078D6A4	EnsemblPlants:CDX84697
ProteinID:CDX84697	ProteinID:CDX84697.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00141977001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0004EEEECE
SEG:seg	:	:	:	:	:

Description

BnaA03g15330D

Coordinates

chrLK031838:+:766235..769601

Molecular Weight (calculated)

59629.2 Da

IEP (calculated)

5.814

GRAVY (calculated)

-0.054

Length

563 amino acids

Sequence
(BLAST)

001: MYRLISSIAS KARVARNCTS QIGSRLSSTR NYAAKDIRFG VEGRALMLRG VEELADAVKV TMGPKGRNVI IEQSWGAPKV TKDGVTVAKS IEFKDRVKNV
101: GASLVKQVAN ATNDVAGDGT TCATVLTRAI FTEGCKSVAA GMNAMDLRRG IKLAVDTVVT NLKSRARMIS TSEEIAQVGT ISANGDREIG ELIAKAMESV
201: GKEGVITIQD GKTLFNELEV VEGMKIDRGY ISPYFITNQK NQKCELEDPL ILIHEKKISN LNSMVKVLEL ALKSQRSLLI VAEDLESDAL AVLILNKLRA
301: GIKVCAVKAP GFGENQELGM NLEKIDLSML GNCKKITVSK DDTVFLDGAG DKKAIGERCE QIRSMVEASE SDYDKEKLQE RLAKLSGGVA VLKIGGASES
401: EVGEKKDRVT DALNATKAAV EEGIVPGGGV ALLYASKELD KLSTANFDQK IGVQIIQNAL KTPVYTIASN AGVEGAVIVG KLLESDNPDL GYDAAKGEYV
501: DMVKSGIIDP VKVIRTALVD AASVSSLLTT TEAVVTEIPT KEDASPAMGG GGGGMGGMGG MGF

Best Arabidopsis Sequence Match ( AT2G33210.1 )
(BLAST)

001: MYRLVSNVAS KARIARKCTS QIGSRLNSTR NYAAKDIRFG VEARALMLRG VEDLADAVKV TMGPKGRNVI IEQSWGAPKV TKDGVTVAKS IEFKDRIKNV
101: GASLVKQVAN ATNDVAGDGT TCATVLTRAI FTEGCKSVAA GMNAMDLRRG IKLAVDTVVT NLQSRARMIS TSEEIAQVGT ISANGDREIG ELIAKAMETV
201: GKEGVITIQD GKTLFNELEV VEGMKIDRGY ISPYFITNPK TQKCELEDPL ILIHEKKISN INAMVKVLEL ALKKQRPLLI VAEDVESDAL ATLILNKLRA
301: NIKVCAVKAP GFGENRKANL HDLAALTGAQ VITEELGMNL DNIDLSMFGN CKKVTVSKDD TVVLDGAGDK QAIGERCEQI RSMVEASTSD YDKEKLQERL
401: AKLSGGVAVL KIGGASETEV SEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYASKELEKL STANFDQKIG VQIIQNALKT PVYTIASNAG VEGAVVVGKL
501: LEQDNPDLGY DAAKGEYVDM IKAGIIDPLK VIRTALVDAA SVSSLLTTTE AVVTEIPTKE VASPGMGGGG MGGMGGMGGM GGMGF

Arabidopsis Description

HSP60-2Chaperonin CPN60-like 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7B5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.