CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030858.1-P	Field mustard	cytosol	96.84	97.97
CDY08245	Canola	plastid	83.5	97.0
AT1G55490.3	Thale cress	plastid	82.5	95.83
CDY26100	Canola	plastid	84.65	93.95
CDX82537	Canola	plastid	77.62	92.16
CDX75713	Canola	plastid	77.91	91.57
CDX75715	Canola	cytosol	71.59	88.63
KRH13605	Soybean	nucleus	73.74	86.97
Zm00001d035937_P001	Maize	plastid	72.17	86.87
KRH43861	Soybean	plastid	73.46	86.49
PGSC0003DMT400061700	Potato	extracellular	74.32	86.48
Solyc01g028810.2.1	Tomato	plastid	74.32	86.48
EER89076	Sorghum	plastid	71.59	86.18
CDY11918	Canola	plastid	72.6	85.04
CDY32855	Canola	plastid	72.17	84.68
TraesCS6B01G012000.1	Wheat	cytosol	49.93	84.67
HORVU7Hr1G006490.2	Barley	cytosol	67.29	84.66
Os06t0114000-02	Rice	plastid	72.6	84.19
Zm00001d045544_P002	Maize	plastid	72.31	84.0
TraesCS4A01G452700.2	Wheat	plastid	70.01	83.56
GSMUA_Achr3P27620_001	Banana	plastid	73.17	83.33
GSMUA_Achr9P23240_001	Banana	plastid	73.17	83.33
CDY36809	Canola	plastid	72.17	82.87
HORVU4Hr1G076680.1	Barley	cytosol	23.24	81.82
Os02t0102900-01	Rice	plastid	69.58	81.1
TraesCS6A01G006400.1	Wheat	golgi	69.58	81.1
HORVU5Hr1G074160.1	Barley	cytosol	22.67	81.03
TraesCS7A01G036200.2	Wheat	golgi	72.02	80.97
TraesCS6B01G011800.1	Wheat	plastid	68.44	80.44
TraesCS6D01G009100.1	Wheat	golgi	69.01	80.43
TraesCS6B01G012100.3	Wheat	plastid	69.15	80.33
HORVU2Hr1G107410.2	Barley	cytosol	22.96	80.0
KXG29249	Sorghum	plastid	69.3	79.97
TraesCS7D01G032800.1	Wheat	cytosol	71.74	79.49
CDX72433	Canola	endoplasmic reticulum	35.87	79.11
Zm00001d054089_P002	Maize	plastid	68.44	77.31
Zm00001d016540_P001	Maize	cytosol	11.48	76.92
CDY32775	Canola	cytosol	9.18	75.29
CDY10557	Canola	endoplasmic reticulum, plastid	89.53	75.27
TraesCS6B01G039300.2	Wheat	plastid	64.56	75.25
TraesCS6A01G028100.1	Wheat	plastid	64.42	75.08
TraesCS6D01G031400.1	Wheat	plastid	64.13	74.75
HORVU6Hr1G005220.3	Barley	plastid	63.85	74.41
GSMUA_Achr11P...	Banana	plastid	74.03	74.14
Zm00001d053279_P001	Maize	mitochondrion	16.64	73.89
Zm00001d046709_P001	Maize	mitochondrion	16.36	72.61
CDY23605	Canola	cytosol	43.76	70.28
HORVU6Hr1G000180.2	Barley	plastid	65.42	70.05
HORVU4Hr1G066820.2	Barley	cytosol	23.39	69.36
CDY56074	Canola	plastid	47.06	69.05
Zm00001d037526_P001	Maize	plastid	16.93	66.67
CDY20555	Canola	plastid	53.8	61.78
CDY66193	Canola	plastid	53.52	61.45
CDY43988	Canola	cytosol	44.05	59.73
CDY10302	Canola	extracellular	5.45	58.46
CDX86994	Canola	mitochondrion, plastid	50.65	50.28
CDY68896	Canola	cytosol	24.1	49.85
CDX83280	Canola	plastid	40.6	48.63
CDY30514	Canola	plastid	40.6	48.38
CDY31190	Canola	plastid	40.6	48.29
CDX79518	Canola	cytosol	13.92	48.02
CDY04527	Canola	plastid	40.75	47.65
CDX71396	Canola	plastid	34.72	45.75
CDX77147	Canola	plastid	40.6	45.5
CDX94835	Canola	mitochondrion	37.59	45.41
CDX93002	Canola	mitochondrion	35.58	45.09
CDY47184	Canola	plastid	37.02	44.64
CDX84697	Canola	mitochondrion	35.87	44.41
CDY02601	Canola	plastid	36.73	44.29
CDY59050	Canola	cytosol	21.23	43.79
CDY17152	Canola	mitochondrion	35.87	43.55
CDY72107	Canola	mitochondrion	19.08	43.32
CDY19471	Canola	mitochondrion	36.59	43.0
CDX82514	Canola	mitochondrion	35.01	42.66
CDX75733	Canola	mitochondrion	34.86	42.48
CDY31193	Canola	plastid	13.77	40.51
CDY40825	Canola	endoplasmic reticulum, vacuole	12.34	40.38
CDY59049	Canola	mitochondrion	11.33	36.24
CDY66712	Canola	mitochondrion	30.7	35.49
CDY37741	Canola	mitochondrion	29.41	33.55
CDX85007	Canola	cytosol, plastid	40.6	28.19
CDY56079	Canola	plastid	4.02	20.9
Os02t0103100-01	Rice	plasma membrane, vacuole	0.14	0.68

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
GO:A0A078ES96	EnsemblPlants:CDY02438	ProteinID:CDY02438	ProteinID:CDY02438.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00114056001
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF164	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0004EED141	SEG:seg	:

Description

BnaA08g00450D

Coordinates

chrLK031935:+:8073..12859

Molecular Weight (calculated)

75061.5 Da

IEP (calculated)

5.378

GRAVY (calculated)

-0.326

Length

697 amino acids

Sequence
(BLAST)

001: MNKSRSPSHE ELTNVGGSGD TLIQQEHEDD ESTGSQEEDM NEMNKENEEH PDKENKEEER EAEELRRSNR LRKSPNNYSP SLIKPSNEKM ASTFTATSSI
101: GSMVAPNAHK TDKKLMNKLS SSSFGRRQNV FPKLRRSSPA VVCAAKELHF NKDGTTIRKL QAGVNKLADL VGVTLGPKGR NVVLESKYGS PRIVNDGVTV
201: AREVELEDPV ENIGAKLVRQ AAAKTNDLAG DGTTTSVVLA QGFIAEGVKV VAAGANPVLI TRGIEKTAKA LVAELKKMSK EVEDSELADV AAVSAGNNAE
301: IGSMIAEAMS RVGRKGVVTL EEGKSAENAL YVVEGMQFDR GYVSPYFVTD SEKMSVEFDN CKLLLVDKKI TNARDLVGVL EDAIRGGYPI LIIAEDIEQE
401: ALATLVVNKL RGTLKIAALK APGFGERKSQ YLDDIAILTG ATVIREEVGL SLDKAGKEVL GHAAKVVLTK ETSTIVGDGS TQDAVQKRVT QIKNLIEQAE
501: QDYEKEKLNE RIAKLSGGVA VIQVGAQTET ELKEKKLRVE DALNATKAAV EEGIVVGGGC TLLRLASKVD AIKAALDNDE EKVGADIVKR ALSYPLKLIA
601: KNAGVNGSVV SEKVLSNDNV KFGYNAATGK YEDLMAAGII DPTKVVRCCL EHAASVAKTF LMSDCVVVEI KEPEPVPVGN PMDNSGWFRH SNTFTLQ

Best Arabidopsis Sequence Match ( AT1G55490.5 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.