Factsheet for Solyc01g028810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
plastid: 28183294
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061700	Potato	extracellular	99.67	99.67
VIT_06s0004g00240.t01	Wine grape	plastid	89.98	88.65
CDX75713	Canola	plastid	87.65	88.53
AT3G13470.1	Thale cress	plastid	87.65	88.09
KRH43861	Soybean	plastid	86.98	88.01
Bra001507.1-P	Field mustard	plastid	86.64	87.97
CDX82537	Canola	plastid	85.98	87.73
KRH13605	Soybean	nucleus	86.48	87.65
AT5G56500.2	Thale cress	plastid	86.81	87.1
CDX75715	Canola	cytosol	81.8	87.03
Zm00001d035937_P001	Maize	plastid	83.81	86.7
Bra028922.1-P	Field mustard	plastid	85.48	86.63
EER89076	Sorghum	plastid	83.64	86.53
TraesCS6B01G012000.1	Wheat	cytosol	59.1	86.13
CDY32855	Canola	plastid	85.31	86.03
CDY11918	Canola	plastid	85.31	85.88
AT1G55490.3	Thale cress	plastid	85.98	85.83
CDY08245	Canola	plastid	85.81	85.67
Bra011919.1-P	Field mustard	plastid	86.14	84.87
HORVU7Hr1G006490.2	Barley	cytosol	78.46	84.84
TraesCS4A01G452700.2	Wheat	plastid	82.64	84.76
Os06t0114000-02	Rice	plastid	84.47	84.19
CDY36809	Canola	plastid	84.97	83.86
Zm00001d045544_P002	Maize	plastid	83.97	83.83
GSMUA_Achr9P23240_001	Banana	plastid	85.48	83.66
GSMUA_Achr3P27620_001	Banana	plastid	85.31	83.5
Solyc03g120850.2.1	Tomato	plastid	83.14	82.31
CDY26100	Canola	plastid	85.81	81.85
HORVU4Hr1G076680.1	Barley	cytosol	27.05	81.82
TraesCS7A01G036200.2	Wheat	golgi	84.64	81.77
TraesCS6A01G006400.1	Wheat	golgi	81.64	81.77
TraesCS6B01G011800.1	Wheat	plastid	80.8	81.62
TraesCS6D01G009100.1	Wheat	golgi	81.3	81.44
Os02t0102900-01	Rice	plastid	80.97	81.1
TraesCS6B01G012100.3	Wheat	plastid	81.14	81.0
HORVU5Hr1G074160.1	Barley	cytosol	26.21	80.51
HORVU2Hr1G107410.2	Barley	cytosol	26.88	80.5
KXG29249	Sorghum	plastid	81.14	80.46
TraesCS7D01G032800.1	Wheat	cytosol	84.47	80.45
Zm00001d054089_P002	Maize	plastid	80.47	78.12
CDY32775	Canola	cytosol	11.02	77.65
Zm00001d016540_P001	Maize	cytosol	13.36	76.92
Bra030858.1-P	Field mustard	cytosol	86.98	75.62
TraesCS6B01G039300.2	Wheat	plastid	75.29	75.42
TraesCS6D01G031400.1	Wheat	plastid	75.13	75.25
TraesCS6A01G028100.1	Wheat	plastid	75.13	75.25
HORVU6Hr1G005220.3	Barley	plastid	74.29	74.41
CDY02438	Canola	cytosol	86.48	74.32
GSMUA_Achr11P...	Banana	plastid	85.14	73.28
CDX72433	Canola	endoplasmic reticulum	38.56	73.1
Zm00001d053279_P001	Maize	mitochondrion	18.86	71.97
Zm00001d046709_P001	Maize	mitochondrion	18.53	70.7
HORVU6Hr1G000180.2	Barley	plastid	75.63	69.59
CDY23605	Canola	cytosol	50.25	69.35
HORVU4Hr1G066820.2	Barley	cytosol	26.21	66.81
Zm00001d037526_P001	Maize	plastid	19.37	65.54
Solyc05g010240.2.1	Tomato	plastid	58.1	64.33
CDY56074	Canola	plastid	49.75	62.74
CDY10557	Canola	endoplasmic reticulum, plastid	86.64	62.61
CDY10302	Canola	extracellular	6.51	60.0
CDY43988	Canola	cytosol	51.09	59.53
Bra027431.1-P	Field mustard	cytosol	51.25	59.15
CDX86994	Canola	mitochondrion, plastid	57.6	49.15
Solyc11g069790.1.1	Tomato	plastid	46.91	47.79
Solyc06g075010.2.1	Tomato	plastid	46.58	47.37
Solyc05g053470.2.1	Tomato	plastid	44.07	46.07
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	43.91	45.42
Solyc02g068730.2.1	Tomato	plastid	43.74	44.94
Solyc03g121640.2.1	Tomato	plastid	40.57	42.41
CDY40825	Canola	endoplasmic reticulum, vacuole	15.03	42.25
CDX85007	Canola	cytosol, plastid	46.08	27.49
Os02t0103100-01	Rice	plasma membrane, vacuole	0.33	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0007005
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026
GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	UniProt:K4AV63	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF164	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
EnsemblPlantsGene:Solyc01g028810.2	EnsemblPlants:Solyc01g028810.2.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0002762F51	SEG:seg

Description

Chaperonin 60 subunit beta 3, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G56500) UniProtKB/Swiss-Prot;Acc:C0Z361]

Coordinates

chr1:+:41409558..41414677

Molecular Weight (calculated)

62995.7 Da

IEP (calculated)

5.558

GRAVY (calculated)

-0.062

Length

599 amino acids

Sequence
(BLAST)

001: MASTFAGMSS AGPLAAPSTS SNKLSSVANI SSTSFGSKRN VALKKSRRPT ILAAAKELHF NKDGSAIKKL QNGVNKLADL VGVTLGPKGR NVVLESKYGA
101: PKIVNDGVTV AREVELEDPV ENIGAKLVRQ AAAKTNDLAG DGTTTSVVLA QGLIAEGVKV VAAGANPVLI TRGIEKTAKA LVAELKNMSK EVEDSELADV
201: AAVSAGNNLE VGSMIAEAMS KVGRKGVVTL EEGKSAENSL RVVEGMQFDR GYVSPYFVTD SEKMSVEYEN CKLLLVDKKI TNARDLVNVL EDAIRNGYPI
301: LIIAEDIEQE ALATLVVNKL RGALKVAALK APGFGERKSQ YLDDIATLTG GTVIREELGL TLDKADKEVL GHAAKVVLTK DATTIVGDGS TQEAVNKRVA
401: QIKNLIEAAD QDYEKEKLNE RIAKLSGGVA VIQVGAQTET ELKEKKLRVE DALNATKAAV EEGIVVGGGC TLLRLAAKVD AIKGTLANDE EKVGADIVKR
501: ALSYPLKLIA KNAGVNGSVV SEKVLSSDDP KFGYNAATGN YEDLMAAGII DPTKVVRCCL EHAASVAKTF LMSDCVVVEI KEPEAAVAGN PMDNSGYGY

Best Arabidopsis Sequence Match ( AT3G13470.1 )
(BLAST)

001: MASTFTATSS LGSLLAPNAI KLSSATSISS SSFGRRHNVC VRRSRPAIVC AAKELHFNKD GTTIRKLQTG VNKLADLVGV TLGPKGRNVV LESKYGSPRI
101: VNDGVTVARE VELEDPVENI GAKLVRQAAA KTNDLAGDGT TTSVVLAQGF IAEGVKVVAA GANPVLITRG IEKTAKALVN ELKLMSKEVE DSELADVAAV
201: SAGNNHEVGS MIAEAMSKVG RKGVVTLEEG KSAENNLYVV EGMQFDRGYI SPYFVTDSEK MSVEYDNCKL LLVDKKVTNA RDLVGVLEDA IRGGYPILII
301: AEDIEQEALA TLVVNKLRGT LKIAALKAPG FGERKSQYLD DIAILTGATV IREEVGLSLD KAGKEVLGNA SKVVLTKEMT TIVGDGTTQE AVNKRVVQIR
401: NLIEQAEQDY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVEEG IVVGGGCTLL RLASKVDAIK DTLENDEEKV GAEIVKRALS
501: YPLKLIAKNA GVNGSVVSEK VLANDNVKFG YNAATGKYED LMAAGIIDPT KVVRCCLEHA ASVAKTFLMS DCVVVEIPEP EPVPAGNPMD NSGYGY

Arabidopsis Description

CPN60B2Chaperonin 60 subunit beta 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LJE4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.