Factsheet for Bra011919.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08245	Canola	plastid	97.86	99.17
AT1G55490.3	Thale cress	plastid	95.23	96.5
Bra001507.1-P	Field mustard	plastid	89.64	92.37
Zm00001d035937_P001	Maize	plastid	82.73	86.87
KRH13605	Soybean	nucleus	84.38	86.8
EER89076	Sorghum	plastid	82.4	86.53
KRH43861	Soybean	plastid	84.05	86.32
PGSC0003DMT400061700	Potato	extracellular	84.87	86.14
Solyc01g028810.2.1	Tomato	plastid	84.87	86.14
VIT_06s0004g00240.t01	Wine grape	plastid	86.02	86.02
TraesCS6B01G012000.1	Wheat	cytosol	57.89	85.64
Bra028922.1-P	Field mustard	plastid	82.89	85.28
HORVU7Hr1G006490.2	Barley	cytosol	77.47	85.02
Bra030858.1-P	Field mustard	cytosol	95.72	84.47
Os06t0114000-02	Rice	plastid	82.89	83.86
Zm00001d045544_P002	Maize	plastid	82.73	83.83
GSMUA_Achr3P27620_001	Banana	plastid	84.21	83.66
GSMUA_Achr9P23240_001	Banana	plastid	84.05	83.5
HORVU4Hr1G076680.1	Barley	cytosol	27.14	83.33
TraesCS4A01G452700.2	Wheat	plastid	79.93	83.22
HORVU5Hr1G074160.1	Barley	cytosol	26.48	82.56
TraesCS6A01G006400.1	Wheat	golgi	80.26	81.61
HORVU2Hr1G107410.2	Barley	cytosol	26.81	81.5
Os02t0102900-01	Rice	plastid	79.93	81.27
TraesCS6B01G011800.1	Wheat	plastid	78.95	80.94
TraesCS6D01G009100.1	Wheat	golgi	79.61	80.94
TraesCS6B01G012100.3	Wheat	plastid	79.77	80.83
KXG29249	Sorghum	plastid	80.26	80.79
TraesCS7A01G036200.2	Wheat	golgi	81.74	80.16
TraesCS7D01G032800.1	Wheat	cytosol	81.74	79.01
Zm00001d054089_P002	Maize	plastid	79.11	77.96
Zm00001d016540_P001	Maize	cytosol	13.32	77.88
TraesCS6B01G039300.2	Wheat	plastid	74.67	75.92
TraesCS6A01G028100.1	Wheat	plastid	74.51	75.75
TraesCS6D01G031400.1	Wheat	plastid	74.18	75.42
HORVU6Hr1G005220.3	Barley	plastid	73.85	75.08
Zm00001d053279_P001	Maize	mitochondrion	19.08	73.89
GSMUA_Achr11P...	Banana	plastid	83.55	72.99
Zm00001d046709_P001	Maize	mitochondrion	18.75	72.61
HORVU6Hr1G000180.2	Barley	plastid	74.51	69.59
HORVU4Hr1G066820.2	Barley	cytosol	26.81	69.36
Zm00001d037526_P001	Maize	plastid	19.41	66.67
Bra012462.1-P	Field mustard	plastid	61.35	61.45
Bra027431.1-P	Field mustard	cytosol	50.99	59.73
Bra000498.1-P	Field mustard	mitochondrion	45.07	51.22
Bra011985.1-P	Field mustard	plastid	46.88	48.72
Bra034383.1-P	Field mustard	plastid	46.88	48.72
Bra001934.1-P	Field mustard	mitochondrion	42.76	45.06
Bra023694.1-P	Field mustard	plastid	42.6	44.81
Bra022931.1-P	Field mustard	mitochondrion	39.8	43.45
Bra005514.1-P	Field mustard	mitochondrion	39.8	43.29
Bra001524.1-P	Field mustard	mitochondrion	39.64	42.13
Bra021836.1-P	Field mustard	cytosol	25.99	35.35
Os02t0103100-01	Rice	plasma membrane, vacuole	0.16	0.68

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EnsemblPlantsGene:Bra011919	EnsemblPlants:Bra011919.1	EnsemblPlants:Bra011919.1-P	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
UniProt:M4D611	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF164	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI00025412F1	SEG:seg	:	:	:	:

Description

AT1G55490 (E=2e-308) CPN60B, LEN1 | CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding

Coordinates

chrA07:+:11347612..11350391

Molecular Weight (calculated)

64879.3 Da

IEP (calculated)

6.918

GRAVY (calculated)

-0.113

Length

608 amino acids

Sequence
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLMNKL SSSSFGRRQN VCPRLRRSSP AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVAELKKMS KEVEDSELAD
201: VAAVSAGNNE EIGSMIAEAM SRVGRKGVVT LEEGKSAENA LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGHAAKVVLT KETSTIVGDG STQEAVQKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLEND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNEN VKYGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPAG NPMDNSGLFR
601: RSDTLNLR

Best Arabidopsis Sequence Match ( AT1G55490.5 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.