Factsheet for TraesCS7A01G036200.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G452700.2	Wheat	plastid	93.55	99.32
TraesCS7D01G032800.1	Wheat	cytosol	98.23	96.82
EER89076	Sorghum	plastid	88.55	94.82
Zm00001d035937_P001	Maize	plastid	88.39	94.65
HORVU7Hr1G006490.2	Barley	cytosol	84.35	94.4
Os06t0114000-02	Rice	plastid	91.29	94.18
Zm00001d045544_P002	Maize	plastid	88.87	91.83
GSMUA_Achr9P23240_001	Banana	plastid	84.19	85.29
GSMUA_Achr3P27620_001	Banana	plastid	84.19	85.29
CDX75713	Canola	plastid	81.29	84.99
PGSC0003DMT400061700	Potato	extracellular	82.1	84.97
Bra001507.1-P	Field mustard	plastid	80.81	84.92
CDX75715	Canola	cytosol	77.1	84.9
CDX82537	Canola	plastid	80.32	84.84
Solyc01g028810.2.1	Tomato	plastid	81.77	84.64
Zm00001d016540_P001	Maize	cytosol	14.19	84.62
TraesCS6A01G006400.1	Wheat	golgi	81.45	84.45
VIT_06s0004g00240.t01	Wine grape	plastid	82.58	84.21
AT3G13470.1	Thale cress	plastid	80.81	84.06
AT1G55490.3	Thale cress	plastid	81.13	83.83
KRH43861	Soybean	plastid	80.0	83.78
KRH13605	Soybean	nucleus	79.52	83.42
VIT_09s0002g03930.t01	Wine grape	plastid	81.45	82.92
CDY08245	Canola	plastid	79.84	82.5
CDY32855	Canola	plastid	78.87	82.32
AT5G56500.2	Thale cress	plastid	79.19	82.24
Bra028922.1-P	Field mustard	plastid	78.06	81.9
Bra011919.1-P	Field mustard	plastid	80.16	81.74
CDY11918	Canola	plastid	77.9	81.18
Solyc03g120850.2.1	Tomato	plastid	78.39	80.33
PGSC0003DMT400006501	Potato	plastid	78.39	80.33
CDY36809	Canola	plastid	77.74	79.41
Zm00001d053279_P001	Maize	mitochondrion	20.0	78.98
CDY26100	Canola	plastid	80.0	78.98
TraesCS6A01G028100.1	Wheat	plastid	75.16	77.93
Zm00001d046709_P001	Maize	mitochondrion	19.68	77.71
Bra030858.1-P	Field mustard	cytosol	81.29	73.15
CDY32775	Canola	cytosol	10.0	72.94
CDY02438	Canola	cytosol	80.97	72.02
Zm00001d037526_P001	Maize	plastid	20.48	71.75
CDX72433	Canola	endoplasmic reticulum	35.97	70.57
CDY23605	Canola	cytosol	46.45	66.36
CDY10557	Canola	endoplasmic reticulum, plastid	81.45	60.92
CDY56074	Canola	plastid	46.61	60.84
CDY10302	Canola	extracellular	5.97	56.92
CDY43988	Canola	cytosol	46.77	56.42
Bra027431.1-P	Field mustard	cytosol	46.94	56.07
TraesCS2A01G311700.1	Wheat	plastid	57.26	54.78
TraesCS4A01G315500.2	Wheat	plastid	45.97	48.63
CDX86994	Canola	mitochondrion, plastid	54.19	47.86
TraesCS1A01G145000.1	Wheat	mitochondrion	42.58	45.99
TraesCS4A01G409100.1	Wheat	mitochondrion	42.26	45.49
TraesCS1A01G361400.1	Wheat	mitochondrion	40.97	43.87
CDY40825	Canola	endoplasmic reticulum, vacuole	14.52	42.25
TraesCS5A01G366800.1	Wheat	plastid	36.61	38.41
CDX85007	Canola	cytosol, plastid	42.74	26.39

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF8	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EnsemblPlantsGene:TraesCS7A01G036200	EnsemblPlants:TraesCS7A01G036200.2	TIGR:cd03344	SEG:seg

Description

No Description!

Coordinates

chr7A:-:16298528..16302921

Molecular Weight (calculated)

66462.3 Da

IEP (calculated)

5.581

GRAVY (calculated)

-0.075

Length

620 amino acids

Sequence
(BLAST)

001: MVLRCAIGKW CSRCELLLHG ENMASPFGAT STVGLMAAPS GIVSDKKPFS LSSISLADRP RHVRLQRKCN FRVKAAKELY FNKDGSATKK LQVGVNKLAD
101: LVGVTLGPKG RNVVLESKYG SPKIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGLIAEGVK VIAAGANPVQ ITRGIEKTAK
201: ALVLELKKMS KEVEDSELAD VAAVSAGNNY EIGNMIAEAM SKVGRKGVVT LEEGRSSENN LYVVEGMQFE RGYISPYFVT DSEKMTTEYE NCKLLLVDKK
301: ITNARDLINV LEEAIRGQYP ILIIAEDIEQ EALATLVVNK LRGSLKICAI KAPGFGERKT QYLDDIAILT GGTVIRDEVG LTLDKADNTV LGTAAKVVLT
401: KESTTIVGDG STQEEVTKRV AQIKNLIEAA EQDYEKEKLN ERIAKLAGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLAAKV
501: DAIKDTLDND EQKVGAEIVR RALCYPLKLI AKNAGVNGSV VTEKVLSNDN FKFGYNAATG QYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLTSDVVVVE
601: IKEPEAAPLA NPMDNSGFGY

Best Arabidopsis Sequence Match ( AT1G55490.5 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.