CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

cytosol 1
endoplasmic reticulum 3
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	cytosol, endoplasmic reticulum, plastid
BaCelLo:	cytosol
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08245	Canola	plastid	70.08	96.83
AT1G55490.3	Thale cress	plastid	69.24	95.67
CDY26100	Canola	plastid	70.93	93.63
CDX82537	Canola	plastid	65.38	92.33
CDX75713	Canola	plastid	65.62	91.74
Bra030858.1-P	Field mustard	cytosol	74.79	89.99
CDY02438	Canola	cytosol	75.27	89.53
CDX75715	Canola	cytosol	60.31	88.81
KRH13605	Soybean	nucleus	62.12	87.14
Zm00001d035937_P001	Maize	plastid	60.55	86.7
KRH43861	Soybean	plastid	61.88	86.66
Solyc01g028810.2.1	Tomato	plastid	62.61	86.64
PGSC0003DMT400061700	Potato	extracellular	62.61	86.64
EER89076	Sorghum	plastid	60.31	86.36
CDY11918	Canola	plastid	61.16	85.21
Zm00001d045544_P002	Maize	plastid	61.52	85.0
TraesCS6B01G012000.1	Wheat	cytosol	42.1	84.91
CDY32855	Canola	plastid	60.8	84.85
HORVU7Hr1G006490.2	Barley	cytosol	56.69	84.84
Os06t0114000-02	Rice	plastid	61.16	84.36
TraesCS4A01G452700.2	Wheat	plastid	58.99	83.73
GSMUA_Achr3P27620_001	Banana	plastid	61.64	83.5
GSMUA_Achr9P23240_001	Banana	plastid	61.64	83.5
CDY36809	Canola	plastid	60.92	83.2
HORVU4Hr1G076680.1	Barley	cytosol	19.54	81.82
TraesCS7A01G036200.2	Wheat	golgi	60.92	81.45
TraesCS6A01G006400.1	Wheat	golgi	58.62	81.27
HORVU5Hr1G074160.1	Barley	cytosol	19.06	81.03
Os02t0102900-01	Rice	plastid	58.38	80.94
TraesCS6B01G011800.1	Wheat	plastid	57.66	80.61
TraesCS6D01G009100.1	Wheat	golgi	58.14	80.6
TraesCS6B01G012100.3	Wheat	plastid	58.26	80.5
TraesCS7D01G032800.1	Wheat	cytosol	60.92	80.29
KXG29249	Sorghum	plastid	58.38	80.13
HORVU2Hr1G107410.2	Barley	cytosol	19.3	80.0
CDX72433	Canola	endoplasmic reticulum	30.04	78.8
Zm00001d016540_P001	Maize	cytosol	9.77	77.88
Zm00001d054089_P002	Maize	plastid	57.66	77.47
CDY32775	Canola	cytosol	7.84	76.47
GSMUA_Achr11P...	Banana	plastid	63.69	75.86
TraesCS6B01G039300.2	Wheat	plastid	54.4	75.42
TraesCS6A01G028100.1	Wheat	plastid	54.28	75.25
TraesCS6D01G031400.1	Wheat	plastid	54.04	74.92
HORVU6Hr1G005220.3	Barley	plastid	53.8	74.58
Zm00001d053279_P001	Maize	mitochondrion	14.11	74.52
Zm00001d046709_P001	Maize	mitochondrion	13.87	73.25
HORVU6Hr1G000180.2	Barley	plastid	55.73	70.97
CDY23605	Canola	cytosol	36.91	70.51
CDY56074	Canola	plastid	39.57	69.05
HORVU4Hr1G066820.2	Barley	cytosol	19.54	68.94
Zm00001d037526_P001	Maize	plastid	14.35	67.23
CDY20555	Canola	plastid	45.24	61.78
CDY66193	Canola	plastid	44.99	61.45
CDY43988	Canola	cytosol	37.15	59.92
CDY10302	Canola	extracellular	4.58	58.46
CDX86994	Canola	mitochondrion, plastid	42.7	50.43
CDY68896	Canola	cytosol	20.14	49.55
CDX83280	Canola	plastid	34.02	48.45
CDY30514	Canola	plastid	34.02	48.21
CDY31190	Canola	plastid	34.02	48.12
CDX79518	Canola	cytosol	11.7	48.02
CDY04527	Canola	plastid	34.14	47.48
CDX71396	Canola	plastid	29.07	45.56
CDX94835	Canola	mitochondrion	31.6	45.41
CDX77147	Canola	plastid	34.02	45.34
CDX93002	Canola	mitochondrion	29.92	45.09
CDY47184	Canola	plastid	31.12	44.64
CDX84697	Canola	mitochondrion	30.16	44.41
CDY02601	Canola	plastid	30.88	44.29
CDY59050	Canola	cytosol	17.85	43.79
CDY17152	Canola	mitochondrion	30.16	43.55
CDY72107	Canola	mitochondrion	16.04	43.32
CDY19471	Canola	mitochondrion	30.76	43.0
CDX82514	Canola	mitochondrion	29.43	42.66
CDX75733	Canola	mitochondrion	29.31	42.48
CDY31193	Canola	plastid	11.58	40.51
CDY40825	Canola	endoplasmic reticulum, vacuole	10.37	40.38
CDY59049	Canola	mitochondrion	9.53	36.24
CDY66712	Canola	mitochondrion	25.81	35.49
CDY37741	Canola	mitochondrion	24.73	33.55
CDX85007	Canola	cytosol, plastid	34.26	28.29
CDY56079	Canola	plastid	3.38	20.9
Os02t0103100-01	Rice	plasma membrane, vacuole	0.12	0.68

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
GO:A0A078FC51	UniProt:A0A078FC51	EnsemblPlants:CDY10557	ProteinID:CDY10557	ProteinID:CDY10557.1	InterPro:Chaperonin_Cpn60_CS
InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00032517001	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF164	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0004EE48D4	SEG:seg	:	:

Description

BnaC03g70570DBnaC03g70570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FC51]

Coordinates

chrLK032004:+:338178..342797

Molecular Weight (calculated)

88649.4 Da

IEP (calculated)

8.950

GRAVY (calculated)

-0.003

Length

829 amino acids

Sequence
(BLAST)

001: MALFFVIPFK SSCVGSDLSI LSDMRADLEA STALASPLKF PGCGGFLSSV ASAKLPERGG SYSFIVAGFW CAQKLSLARV CWMSFRRKTM DDIRWKDVPG
101: RFGGRGEEGE EPKCSGVARC VGGVSPVVVV KDVRLRLAME AADICFSFGL WAAGFLSLDI GPGARFSVFG FRPYRWLNPT VKIHSRRAKG NVKSTLSLKE
201: INLLLASAAP QFLIRGASPP LRFTSLEKMA STFTATSSIG SMVAPNAHKT DKKLMNKLSS SSFGRRQNVF PKLRRSSPAV VCAAKELHFN KDGTTIRKLQ
301: AGVNKLADLV GVTLGPKGRN VVLESKYGSP RIVNDGVTVA REVELEDPVE NIGAKLVRQA AAKTNDLAGD GTTTSVVLAQ GFIAEGVKVV AAGANPVLIT
401: RGIEKTAKAL VAELKKMSKE VEDSELADVA AVSAGNNAEI GSMIAEAMSR VGRKGVVTLE EGKSAENALY VVEGMQFDRG YVSPYFVTDS EKMSVEFDNC
501: KLLLVDKKIT NARDLVGVLE DAIRGGYPIL IIAEDIEQEA LATLVVNKLR GTLKIAALKA PGFGERKSQY LDDIAILTGA TVIREEVGLS LDKAGKEVLG
601: HAAKVVLTKE TSTIVGDGST QEAVQKRVTQ IKNLIEQAEQ DYEKEKLNER IAKLSGGVAV IQVGAQTETE LKEKKLRVED ALNATKAAVE EGIVVGGGCT
701: LLRLASKVDA IKAALDNDEE KVGADIVKRA LSYPLKLIAK NAGVNGSVVS EKVLSNDNVK FGYNAATGKY EDLMAAGIID PTKVVRCCLE HAASVAKTFL
801: MSDCVVVEIK EPEPVPVGNP MDNSGLFRH

Best Arabidopsis Sequence Match ( AT1G55490.5 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.