CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47184	Canola	plastid	98.27	98.27
AT5G18820.1	Thale cress	plastid	92.39	92.87
VIT_01s0011g01680.t01	Wine grape	plastid	72.49	71.87
KRH50415	Soybean	plastid	70.76	69.68
KRG89369	Soybean	plastid	70.76	69.44
PGSC0003DMT400027020	Potato	cytosol	64.01	69.03
Solyc02g068730.2.1	Tomato	plastid	68.69	68.1
CDY68896	Canola	cytosol	35.29	60.53
CDX83280	Canola	plastid	59.0	58.59
CDY30514	Canola	plastid	59.0	58.29
CDY31190	Canola	plastid	59.0	58.19
Os09t0563300-02	Rice	plastid	58.65	58.05
HORVU0Hr1G038830.17	Barley	plastid	58.82	57.63
EER96340	Sorghum	plastid	58.13	57.44
CDY04527	Canola	plastid	59.17	57.38
TraesCS5A01G366800.1	Wheat	plastid	58.48	57.19
TraesCS5B01G368900.1	Wheat	plastid	58.13	56.95
TraesCS5D01G376000.1	Wheat	plastid	57.96	56.78
CDX71396	Canola	plastid	51.04	55.77
CDX77147	Canola	plastid	58.82	54.66
CDY31193	Canola	plastid	19.72	48.1
CDX75715	Canola	cytosol	42.73	43.87
CDX82537	Canola	plastid	44.29	43.61
CDY32855	Canola	plastid	44.29	43.1
CDX75713	Canola	plastid	44.12	43.0
CDY11918	Canola	plastid	43.94	42.69
CDY08245	Canola	plastid	44.29	42.67
CDY36809	Canola	plastid	44.12	42.01
CDX72433	Canola	endoplasmic reticulum	22.84	41.77
CDY26100	Canola	plastid	44.29	40.76
CDY23605	Canola	cytosol	30.45	40.55
CDX79518	Canola	cytosol	13.67	39.11
CDX94835	Canola	mitochondrion	37.2	37.26
CDY02438	Canola	cytosol	44.29	36.73
CDY59050	Canola	cytosol	21.45	36.69
CDX84697	Canola	mitochondrion	35.64	36.59
CDY19471	Canola	mitochondrion	37.37	36.42
CDY20555	Canola	plastid	38.24	36.41
CDY66193	Canola	plastid	38.06	36.24
CDY17152	Canola	mitochondrion	35.99	36.24
CDX93002	Canola	mitochondrion	34.43	36.18
CDY72107	Canola	mitochondrion	18.86	35.5
CDX82514	Canola	mitochondrion	34.95	35.31
CDX75733	Canola	mitochondrion	34.78	35.14
CDY32775	Canola	cytosol	5.02	34.12
CDY43988	Canola	cytosol	30.28	34.05
CDY56074	Canola	plastid	27.68	33.68
CDY10557	Canola	endoplasmic reticulum, plastid	44.29	30.88
GSMUA_Achr10P...	Banana	cytosol	64.88	30.59
CDY66712	Canola	mitochondrion	31.49	30.18
CDY37741	Canola	mitochondrion	30.62	28.97
Zm00001d005373_P001	Maize	plastid	58.82	28.31
CDY40825	Canola	endoplasmic reticulum, vacuole	9.86	26.76
CDY10302	Canola	extracellular	2.94	26.15
CDY59049	Canola	mitochondrion	9.86	26.15
CDX86994	Canola	mitochondrion, plastid	30.8	25.36
CDY56079	Canola	plastid	4.15	17.91
CDX85007	Canola	cytosol, plastid	25.26	14.54

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
GO:A0A078EN76	EnsemblPlants:CDY02601	ProteinID:CDY02601	ProteinID:CDY02601.1	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf
EnsemblPlantsGene:GSBRNA2T00114724001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118
PRINTS:PR00298	PANTHER:PTHR11353	PANTHER:PTHR11353:SF172	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0004EE1A4C	SEG:seg	:	:

Description

BnaC02g08340D

Coordinates

chrLK031936:-:326608..329457

Molecular Weight (calculated)

61183.4 Da

IEP (calculated)

7.495

GRAVY (calculated)

0.030

Length

578 amino acids

Sequence
(BLAST)

001: MFAVSPSYFS PATISPSRSG QGKKPQLPRK LSVVRAGGKR ILYGKDSREA LQAGIDKLAD AVSVTLGPRG RNVVLAESDT IKVINDGVTI AKSIELTDTI
101: ENAGATLIQE VAIKMNESAG DGTTTAIILA REMIKAGSLA IAFGANAVSV KNGMNKTVKE LVRVLQMKSV PVKGKSDVKA VASISAGNDE FVGDLIAETV
201: EKIGPDGVIS IETSSTSETS VIVEEGMKFD KGYMSPHFIT NQEKSTVEFD KAKILVTDQK ITSAKELVPL LEKTSQLSVP LLIIAENISA EVLEILVVNK
301: KQGLINVAVV KCPGMLDGKK ALLQDIALMT GADYLAGDLG MSLMGATSDQ LGVARKVTVT ANSTTIVADP STKPEIRARI AQMKKDLAET DNSYMTGKIA
401: ERIAKLSGGV AVIKVGGHTE TELEDRKLRI EDAKNATFAA MREGIVPGGG ATYIHLLDEI PRIKKTLMED LYEQIGADIV ATALKAPAMV IATNAGVDGS
501: VVVEKTRELE WRSGYNAMSG RYEDLINAGI ADPCKVSRFA LQNAVSVAGI VLTTQAVLVE KIKQPKPAVP EVPGIPTS

Best Arabidopsis Sequence Match ( AT5G18820.1 )
(BLAST)

001: MFAVSPSSFS PTTISPRRSG QRNEPRKFSV VRAGAKRILY GKDSREKLQA GIDKLADAVS ITLGPRGRNV VLAEKDTIKV INDGVTIAKS IELPDTIENA
101: GATLIQEVAI KMNESAGDGT TTAIILAREM IKAGSLAIAF GANAVSVKNG MNKTVKELVR VLQMKSIPVQ GKNDIKAVAS ISAGNDEFVG NLIAETVEKI
201: GPDGVISIES SSTSETSVIV EEGMKFDKGY MSPHFITNQE KSTVEFDKAK ILVTDQKITS AKELVPLLEK TSQLSVPLLI IAEDISAEVL EILVVNKKQG
301: LINVAVVKCP GMLDGKKALL QDIALMTGAD YLSGDLGMSL MGATSDQLGV SRRVVITANS TTIVADASTK PEIQARIAQM KKDLAETDNS YLSKKIAERI
401: AKLTGGVAVI KVGGHTETEL EDRKLRIEDA KNATFAAMRE GIVPGGGATY IHLLDEIPRI KKNLMEDSYE QIGADIVAMA LTAPAMAIAT NAGVDGSVVV
501: QKTRELEWRS GYNAMSGKYE DLLNAGIADP CRVSRFALQN AVSVAGIILT TQAVLVEKIK QPKPAVPQVP GIPTS

Arabidopsis Description

CPN60A2Chaperonin 60 subunit alpha 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q56XV8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.