Factsheet for Os09t0563300-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G038830.17	Barley	plastid	90.24	89.32
TraesCS5B01G368900.1	Wheat	plastid	90.07	89.15
EER96340	Sorghum	plastid	89.04	88.89
TraesCS5A01G366800.1	Wheat	plastid	89.9	88.83
TraesCS5D01G376000.1	Wheat	plastid	89.55	88.64
VIT_01s0011g01680.t01	Wine grape	plastid	61.64	61.75
KRH50415	Soybean	plastid	61.47	61.16
PGSC0003DMT400027020	Potato	cytosol	55.82	60.82
KRG89369	Soybean	plastid	60.1	59.59
AT5G18820.1	Thale cress	plastid	58.56	59.48
Bra023694.1-P	Field mustard	plastid	58.39	59.0
CDY47184	Canola	plastid	58.39	59.0
Solyc02g068730.2.1	Tomato	plastid	58.73	58.83
Os03t0859600-01	Rice	plastid	31.34	58.65
CDY02601	Canola	plastid	58.05	58.65
Os12t0277500-01	Rice	plastid	56.85	57.44
Os03t0859700-00	Rice	extracellular, plastid	16.44	51.89
Zm00001d005373_P001	Maize	plastid	89.04	43.3
Os10t0462900-01	Rice	mitochondrion	38.36	39.02
Os03t0143400-01	Rice	mitochondrion	38.53	38.99
Os02t0102900-01	Rice	plastid	38.7	37.79
Os05t0540300-01	Rice	mitochondrion	37.5	37.69
Os06t0114000-02	Rice	plastid	38.36	37.27
Os04t0443900-01	Rice	plastid	36.47	36.22
GSMUA_Achr10P...	Banana	cytosol	66.44	31.65
Os02t0103100-01	Rice	plasma membrane, vacuole	0.17	0.68

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	EnsemblPlantsGene:Os09g0563300
EnsemblPlants:Os09t0563300-02	PFAM:PF00118	PRINTS:PR00298	PANTHER:PTHR11353	PANTHER:PTHR11353:SF121	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0001C7A859	SEG:seg

Description

TCD9Similar to GroEL-like chaperone, ATPase. (Os09t0563300-01);Alpha subunit of chaperonin protein 60, Chloroplast development at early leaf stage (Os09t0563300-02)

Coordinates

chr9:+:22382924..22387028

Molecular Weight (calculated)

62418.0 Da

IEP (calculated)

5.639

GRAVY (calculated)

0.086

Length

584 amino acids

Sequence
(BLAST)

001: MSLTTVSFSY PAKPLPKWPC TLPKPPPRAR CRFVVRADVK VISSGEACRR GLAAGIDKLA DAVAVTLGPK GRNVVIDQDD VPKVINDGIT IAKAIELPNA
101: VEHAGAMLLQ EIASKTNSSV GDGTTTAIIL AREIINLGLL AVATGANPVA LRKGIDKAVH ELIGILKTKC IPVSTKEDIK AVASISAGND EYVGDLIADA
201: LEKIGPDGII KIESSSSIYT SVEVQEGMKI DKGYISPHFI TNQDKAIVEF ENARVLLTDQ RVDDVQEILP LLEKTTQLSV PLLIIAEDVS HTVYSTLVLN
301: KLNGLLNVAV VKCPGLGDEK KAILQDIAIM TGADFFASDL GWCLQGATSD QLGMAQKITI TSDTTTIIAH PSMRPEIEAR IQQLKKDLEE TTSAYLKERF
401: SSRIAKLSRG IAVIKVGAAT EAELEDRKLR AEDAKNATFA AISEGITPGG GVTYVQLSKY IPSIMDLVDD SEEKIGVNIV GKALLVPAMT IARNAGADGP
501: AVVEKLLASE WRVGYNAMTD KFEDLVDAGV VDPCRVARCV LQNSASIAGL ILMTQAMMFD KIKKKKSTIP QIPGIPPLQI NQNA

Best Arabidopsis Sequence Match ( AT5G18820.1 )
(BLAST)

001: MFAVSPSSFS PTTISPRRSG QRNEPRKFSV VRAGAKRILY GKDSREKLQA GIDKLADAVS ITLGPRGRNV VLAEKDTIKV INDGVTIAKS IELPDTIENA
101: GATLIQEVAI KMNESAGDGT TTAIILAREM IKAGSLAIAF GANAVSVKNG MNKTVKELVR VLQMKSIPVQ GKNDIKAVAS ISAGNDEFVG NLIAETVEKI
201: GPDGVISIES SSTSETSVIV EEGMKFDKGY MSPHFITNQE KSTVEFDKAK ILVTDQKITS AKELVPLLEK TSQLSVPLLI IAEDISAEVL EILVVNKKQG
301: LINVAVVKCP GMLDGKKALL QDIALMTGAD YLSGDLGMSL MGATSDQLGV SRRVVITANS TTIVADASTK PEIQARIAQM KKDLAETDNS YLSKKIAERI
401: AKLTGGVAVI KVGGHTETEL EDRKLRIEDA KNATFAAMRE GIVPGGGATY IHLLDEIPRI KKNLMEDSYE QIGADIVAMA LTAPAMAIAT NAGVDGSVVV
501: QKTRELEWRS GYNAMSGKYE DLLNAGIADP CRVSRFALQN AVSVAGIILT TQAVLVEKIK QPKPAVPQVP GIPTS

Arabidopsis Description

CPN60A2Chaperonin 60 subunit alpha 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q56XV8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.