Factsheet for PGSC0003DMT400027020

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g068730.2.1	Tomato	plastid	93.66	86.11
VIT_01s0011g01680.t01	Wine grape	plastid	76.87	70.67
AT5G18820.1	Thale cress	plastid	69.59	64.87
KRH50415	Soybean	plastid	70.9	64.74
CDY47184	Canola	plastid	69.78	64.71
Bra023694.1-P	Field mustard	plastid	69.59	64.53
KRG89369	Soybean	plastid	70.9	64.52
CDY02601	Canola	plastid	69.03	64.01
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	61.94	56.46
EER96340	Sorghum	plastid	61.01	55.9
Os09t0563300-02	Rice	plastid	60.82	55.82
HORVU0Hr1G038830.17	Barley	plastid	61.19	55.59
TraesCS5A01G366800.1	Wheat	plastid	61.19	55.5
TraesCS5B01G368900.1	Wheat	plastid	60.82	55.25
TraesCS5D01G376000.1	Wheat	plastid	60.63	55.08
PGSC0003DMT400031301	Potato	plastid	59.51	54.16
PGSC0003DMT400064673	Potato	cytosol	35.26	41.91
PGSC0003DMT400061700	Potato	extracellular	46.08	41.24
PGSC0003DMT400006501	Potato	plastid	45.15	40.0
PGSC0003DMT400006642	Potato	cytosol	34.14	35.81
PGSC0003DMT400030265	Potato	mitochondrion	38.06	35.48
PGSC0003DMT400069855	Potato	mitochondrion	37.31	34.9
GSMUA_Achr10P...	Banana	cytosol	68.47	29.93
Zm00001d005373_P001	Maize	plastid	61.01	27.23

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M1AP19
PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400010424	PGSC:PGSC0003DMG400010424	EnsemblPlants:PGSC0003DMT400027020	PRINTS:PR00298	ScanProsite:PS00296
PANTHER:PTHR11353	PANTHER:PTHR11353:SF172	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02348	UniParc:UPI000296DB1E	SEG:seg	:	:	:

Description

Rubisco subunit binding-protein alpha subunit, ruba [Source:PGSC_GENE;Acc:PGSC0003DMG400010424]

Coordinates

chr2:-:27594795..27598612

Molecular Weight (calculated)

57090.4 Da

IEP (calculated)

4.956

GRAVY (calculated)

0.071

Length

536 amino acids

Sequence
(BLAST)

001: MYEELVFRHS IYAVCLLVLD CDDCVTNYAG RNVVLSEAGG LKIINDGVTI AQAIELPDTI ENAGATLIQE VATKTNRLAG DGTTTAIVLA REMIKAGLLA
101: VDFGANPVSM KKGMDQTVRE LVKTLKKKSH PVRGNDDIKA VASISAGNDE FIGSLIAEAI KKIGPDGVIC IESSSSAETS IMVEEGMKID KGYMSPHFIN
201: NPDKSIVEFE NAKVLVTDQK ISSVKEIVPL LEKATQLSVP LLIFAEDISK QVLETLVINK MQGMLSVAVV QCPGFRDGKK GVLQDIAMLT GADFLSGDLG
301: LTLEGATSDQ LGIARKITIT SNSTTIVAHP STKAEIQARI MQIKKDLAET DNKSISEKLS QRIAKLSGGV AILKVGAHTE TELEDRKLRI EDAKNATFAA
401: MDEGIVPGGG ATFIHLSEQV PLIKESFQDP DEQIGADIIG TALLAPAKLI AANAGVDGDT VVEKVRGCDW KMGYNAMTGK YEDLLASGII DPCRVSRCAL
501: QNAVSVAGIV LTTQAIMVEK TKEPKPLVPH IPGISP

Best Arabidopsis Sequence Match ( AT5G18820.1 )
(BLAST)

001: MFAVSPSSFS PTTISPRRSG QRNEPRKFSV VRAGAKRILY GKDSREKLQA GIDKLADAVS ITLGPRGRNV VLAEKDTIKV INDGVTIAKS IELPDTIENA
101: GATLIQEVAI KMNESAGDGT TTAIILAREM IKAGSLAIAF GANAVSVKNG MNKTVKELVR VLQMKSIPVQ GKNDIKAVAS ISAGNDEFVG NLIAETVEKI
201: GPDGVISIES SSTSETSVIV EEGMKFDKGY MSPHFITNQE KSTVEFDKAK ILVTDQKITS AKELVPLLEK TSQLSVPLLI IAEDISAEVL EILVVNKKQG
301: LINVAVVKCP GMLDGKKALL QDIALMTGAD YLSGDLGMSL MGATSDQLGV SRRVVITANS TTIVADASTK PEIQARIAQM KKDLAETDNS YLSKKIAERI
401: AKLTGGVAVI KVGGHTETEL EDRKLRIEDA KNATFAAMRE GIVPGGGATY IHLLDEIPRI KKNLMEDSYE QIGADIVAMA LTAPAMAIAT NAGVDGSVVV
501: QKTRELEWRS GYNAMSGKYE DLLNAGIADP CRVSRFALQN AVSVAGIILT TQAVLVEKIK QPKPAVPQVP GIPTS

Arabidopsis Description

CPN60A2Chaperonin 60 subunit alpha 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q56XV8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.