Factsheet for PGSC0003DMT400064673

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g010240.2.1	Tomato	plastid	84.7	70.61
VIT_01s0010g00920.t01	Wine grape	mitochondrion	76.27	56.39
KRH75202	Soybean	plastid	72.73	54.21
KRH71056	Soybean	plastid	72.06	53.72
CDY20555	Canola	plastid	71.18	52.88
Bra012462.1-P	Field mustard	plastid	70.73	52.55
CDY66193	Canola	plastid	70.73	52.55
GSMUA_Achr9P18480_001	Banana	plastid	68.74	52.45
AT1G26230.1	Thale cress	plastid	70.73	52.21
TraesCS2D01G310000.3	Wheat	plastid	66.08	50.85
TraesCS2B01G328500.3	Wheat	plastid	65.85	50.17
Os04t0443900-01	Rice	plastid	65.19	50.0
HORVU2Hr1G077410.18	Barley	plastid	65.19	49.49
Zm00001d028409_P001	Maize	plastid	64.3	49.32
PGSC0003DMT400061700	Potato	extracellular	63.64	47.91
PGSC0003DMT400006501	Potato	plastid	62.97	46.94
TraesCS2A01G311700.1	Wheat	plastid	65.19	45.37
PGSC0003DMT400027020	Potato	cytosol	41.91	35.26
PGSC0003DMT400006642	Potato	cytosol	37.92	33.46
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	43.46	33.33
PGSC0003DMT400031301	Potato	plastid	43.02	32.94
PGSC0003DMT400069855	Potato	mitochondrion	39.91	31.41
PGSC0003DMT400030265	Potato	mitochondrion	38.8	30.43

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS
InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	UniProt:M1CCQ3	PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400025122	PGSC:PGSC0003DMG400025122
EnsemblPlants:PGSC0003DMT400064673	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF81	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	UniParc:UPI0002949DF0	SEG:seg	:

Description

Rubisco subunit binding-protein beta subunit, rubb [Source:PGSC_GENE;Acc:PGSC0003DMG400025122]

Coordinates

chr5:-:1443538..1454045

Molecular Weight (calculated)

49077.8 Da

IEP (calculated)

8.735

GRAVY (calculated)

-0.129

Length

451 amino acids

Sequence
(BLAST)

001: MGANVVQVSR GIEKTAKALI SELKLMSREV EDHELEDVAA VSAGNDYAIG NMISEALRQV GREGVVTIEK GNSTKTNLEV VEGMQFDRGY LSPYFVTDRR
101: KRIAELHDCK LLLVDKKISN PKELVKFLDN AVKEKYPVLI IAEGIEQDAL APVIRNKLRG VLKVAAIKAP SFGERKSHCL DDIAILTGGT VIRDDMGLTL
201: ENAHKDLLGS ASKVVITKDS TLIVTDGSTR MAVSKRVSQI QNLVENTQEK FQKKILNERI ARLSGGIAII QVGAQTQVEL KDKQLRIEDA LNATRAATEE
301: GVVVGGGCCL LRLSSKVDAI KEMLDNEDQK IGADIFKRAL SYPAKQIAKN AGVNGSIVVE KILSVDDMKY GYNAARDRYE DLMAAKILDP TKVVRCCLEH
401: AAAVAKTFLI SDAVVIDIPE PVSRQIRRPP PPMPTSGPRL SGLSGLKATG L

Best Arabidopsis Sequence Match ( AT1G26230.1 )
(BLAST)

001: MAFSQAALSA LPLSDRTFRK KPSSSSSSSP NFVLRVRAAA KEVHFNRDGS VTKKLQAGAD MVAKLLGVTL GPKGRNVVLQ NKYGPPRIVN DGETVLKEIE
101: LEDPLENVGV KLVRQAGAKT NDLAGDGSTT SIILAHGLIT EGIKVISAGT NPIQVARGIE KTTKALVLEL KSMSREIEDH ELAHVAAVSA GNDYEVGNMI
201: SNAFQQVGRT GVVTIEKGKY LVNNLEIVEG MQFNRGYLSP YFVTDRRKRE AEFHDCKLLL VDKKITNPKD MFKILDSAVK EEFPVLIVAE DIEQDALAPV
301: IRNKLKGNLK VAAIKAPAFG ERKSHCLDDL AIFTGATVIR DEMGLSLEKA GKEVLGTAKR VLVTKDSTLI VTNGFTQKAV DERVSQIKNL IENTEENFQK
401: KILNERVARL SGGIAIIQVG ALTQVELKDK QLKVEDALNA TKSAIEEGIV VGGGCALLRL ATKVDRIKET LDNTEQKIGA EIFKKALSYP IRLIAKNADT
501: NGNIVIEKVL SNKNTMYGYN AAKNQYEDLM LAGIIDPTKV VRCCLEHASS VAQTFLTSDC VVVEIKEIKP RPIINPPLPT SSPATSSMFP DRKLPRFPQI
601: MPRTRSHFPR K

Arabidopsis Description

CPN60B4Cpn60beta4 [Source:UniProtKB/TrEMBL;Acc:A0A178WH16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.