Factsheet for Zm00001d028409_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0443900-01	Rice	plastid	88.1	88.1
TraesCS2B01G328500.3	Wheat	plastid	82.48	81.93
TraesCS2D01G310000.3	Wheat	plastid	81.46	81.74
HORVU2Hr1G077410.18	Barley	plastid	81.63	80.81
TraesCS2A01G311700.1	Wheat	plastid	81.29	73.77
GSMUA_Achr9P18480_001	Banana	plastid	71.09	70.73
Solyc05g010240.2.1	Tomato	plastid	60.03	65.25
VIT_01s0010g00920.t01	Wine grape	mitochondrion	67.18	64.75
KRH75202	Soybean	plastid	66.33	64.46
PGSC0003DMT400064673	Potato	cytosol	49.32	64.3
CDY66193	Canola	plastid	66.33	64.25
CDY20555	Canola	plastid	65.99	63.92
Bra012462.1-P	Field mustard	plastid	65.82	63.76
KRH71056	Soybean	plastid	65.48	63.64
AT1G26230.1	Thale cress	plastid	65.82	63.34
Zm00001d035937_P001	Maize	plastid	59.86	60.79
Zm00001d045544_P002	Maize	plastid	59.86	58.67
Zm00001d017567_P001	Maize	cytosol	15.82	56.36
Zm00001d054089_P002	Maize	plastid	58.33	55.59
Zm00001d016540_P001	Maize	cytosol	8.84	50.0
Zm00001d053279_P001	Maize	mitochondrion	13.1	49.04
Zm00001d046709_P001	Maize	mitochondrion	12.93	48.41
Zm00001d037526_P001	Maize	plastid	13.95	46.33
Zm00001d034919_P001	Maize	plastid	41.84	42.12
Zm00001d000399_P001	Maize	plastid	41.16	41.44
Zm00001d031503_P001	Maize	endoplasmic reticulum	8.5	40.32
Zm00001d032789_P001	Maize	plastid	38.1	38.89
Zm00001d014090_P002	Maize	mitochondrion	37.93	38.65
Zm00001d038857_P001	Maize	mitochondrion	34.86	35.34
Zm00001d013912_P001	Maize	mitochondrion	7.65	35.16
Zm00001d051252_P001	Maize	cytosol	11.56	33.17
Zm00001d005373_P001	Maize	plastid	36.56	17.9

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
UniProt:A0A1D6JVU2	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941
GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	ProteinID:ONL95914.1	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF81	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI000221ADEF	EnsemblPlantsGene:Zm00001d028409	EnsemblPlants:Zm00001d028409_P001	EnsemblPlants:Zm00001d028409_T001	SEG:seg	:

Description

Chaperonin 60 subunit beta 4 chloroplastic

Coordinates

chr1:-:33800139..33804188

Molecular Weight (calculated)

63527.5 Da

IEP (calculated)

7.072

GRAVY (calculated)

-0.054

Length

588 amino acids

Sequence
(BLAST)

001: MSRMAPPSPP QSLKPPTLPF SPPKKPPPMP VYKDLHFNRD LSATKKLQAG VDLVARLLGV TLGPKGRNVV LGNKYGPPKI VNDGETVLKE IELEDPLENL
101: GVKLVRQAGA RTNDIAGDGC TTSIILAQGL IAEGMKVLAA GINPVQVARG IEKTAAALVS ELRLMSRVIE DHEIAHVAAV SAGNDYAVGN MIYDAFQRVG
201: RQGMVRIENG RGTENSLEVL EGMQFERGYL SPYFVTDRGN MTVEFTDCQI LLVDKKITDA SEIIRILDSA VKENYPLLII AEDVEEQAMA DLIKNKLKGT
301: IKVAAVKAFS FGEQKTQCLD DIAIMTGGTL VRDDMGHILE KAGKEVLGSA SKVVITKDST LIVTDGSNRR AVEERVAMIK GQIENSKESY NKKILGERIA
401: RLCGAIAVIQ VGAQTIIEMK DKKLRIEDAL NTTRAAIEEG VVVGGGCSLL RLSEKIDAIK ESSLDNIEQE VGADIFKQAL SYPTSLIAKN AGVNGDFVIK
501: KVLLNDDANY GYNAAKNCYE DLMAAGILDA TKVVRCCIEH AAVVAKSFLT SDVVIVEAKE GKPIRIRPPM PPRHLIPPMP ASISGIRV

Best Arabidopsis Sequence Match ( AT1G26230.4 )
(BLAST)

001: MVVKAGADMV AKLLGVTLGP KGRNVVLQNK YGPPRIVNDG ETVLKEIELE DPLENVGVKL VRQAGAKTND LAGDGSTTSI ILAHGLITEG IKVISAGTNP
101: IQVARGIEKT TKALVLELKS MSREIEDHEL AHVAAVSAGN DYEVGNMISN AFQQVGRTGV VTIEKGKYLV NNLEIVEGMQ FNRGYLSPYF VTDRRKREAE
201: FHDCKLLLVD KKITNPKDMF KILDSAVKEE FPVLIVAEDI EQDALAPVIR NKLKGNLKVA AIKAPAFGER KSHCLDDLAI FTGATVIRDE MGLSLEKAGK
301: EVLGTAKRVL VTKDSTLIVT NGFTQKAVDE RVSQIKNLIE NTEENFQKKI LNERVARLSG GIAIIQVGAL TQVELKDKQL KVEDALNATK SAIEEGIVVG
401: GGCALLRLAT KVDRIKETLD NTEQKIGAEI FKKALSYPIR LIAKNADTNG NIVIEKVLSN KNTMYGYNAA KNQYEDLMLA GIIDPTKVVR CCLEHASSVA
501: QTFLTSDCVV VEIKEIKPRP IINPPLPTSS PATSSMFPDR KLPRFPQIMP RTRSHFPRK

Arabidopsis Description

CPN60B4Cpn60beta4 [Source:UniProtKB/TrEMBL;Acc:A0A178WH16]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.