Factsheet for Zm00001d034919_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
nucleus: 24677780
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90466	Sorghum	plastid	97.09	97.76
Os03t0859600-01	Rice	plastid	48.12	90.06
TraesCS4A01G315500.2	Wheat	plastid	88.7	88.4
TraesCS5D01G550700.1	Wheat	plastid	88.7	88.1
HORVU5Hr1G125130.1	Barley	plastid	88.53	88.08
TraesCS5B01G563900.2	Wheat	plastid	88.36	87.76
Bra000498.1-P	Field mustard	mitochondrion	75.34	82.24
Os03t0859700-00	Rice	extracellular, plastid	26.03	82.16
GSMUA_AchrUn_...	Banana	plastid	80.14	81.11
CDY68896	Canola	cytosol	46.4	80.42
GSMUA_Achr11P...	Banana	plastid	80.31	80.03
KRH25068	Soybean	nucleus	79.97	79.97
Zm00001d000399_P001	Maize	plastid	79.45	79.45
Solyc11g069790.1.1	Tomato	plastid	79.62	79.08
Bra034383.1-P	Field mustard	plastid	79.11	78.97
CDY30514	Canola	plastid	78.94	78.8
CDX83280	Canola	plastid	78.42	78.69
Bra011985.1-P	Field mustard	plastid	78.77	78.63
VIT_06s0061g00270.t01	Wine grape	plastid	78.77	78.5
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	78.94	78.4
CDY31190	Canola	plastid	78.42	78.16
CDY04527	Canola	plastid	79.11	77.52
AT2G28000.1	Thale cress	plastid	77.05	76.79
CDX71396	Canola	plastid	67.81	74.86
KRH30612	Soybean	endoplasmic reticulum	75.34	74.2
CDX77147	Canola	plastid	78.6	73.79
Solyc06g075010.2.1	Tomato	plastid	73.97	73.34
PGSC0003DMT400031301	Potato	plastid	73.46	72.84
Zm00001d051252_P001	Maize	cytosol	22.6	64.39
Zm00001d031503_P001	Maize	endoplasmic reticulum	13.01	61.29
Zm00001d035937_P001	Maize	plastid	48.12	48.53
Zm00001d017567_P001	Maize	cytosol	13.36	47.27
Zm00001d045544_P002	Maize	plastid	48.12	46.83
Zm00001d054089_P002	Maize	plastid	47.09	44.57
Zm00001d032789_P001	Maize	plastid	43.66	44.27
Zm00001d014090_P002	Maize	mitochondrion	43.32	43.85
Zm00001d053279_P001	Maize	mitochondrion	11.47	42.68
Zm00001d028409_P001	Maize	plastid	42.12	41.84
Zm00001d046709_P001	Maize	mitochondrion	10.96	40.76
Zm00001d038857_P001	Maize	mitochondrion	39.9	40.17
Zm00001d037526_P001	Maize	plastid	11.3	37.29
Zm00001d016540_P001	Maize	cytosol	6.51	36.54
Zm00001d013912_P001	Maize	mitochondrion	7.88	35.94
Zm00001d005373_P001	Maize	plastid	55.48	26.98

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	EntrezGene:100281701	MapMan:19.1.7.1	Gene3D:3.30.260.10
Gene3D:3.50.7.10	UniProt:B6SXW8	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1
EMBL:EU957583	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
HAMAP:MF_00600	ProteinID:ONM11757.1	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF179	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI000182D198	EnsemblPlantsGene:Zm00001d034919	EnsemblPlants:Zm00001d034919_P001	EnsemblPlants:Zm00001d034919_T001	SEG:seg	:

Description

RuBisCO large subunit-binding protein subunit alpha

Coordinates

chr1:-:305598350..305602628

Molecular Weight (calculated)

61402.7 Da

IEP (calculated)

4.926

GRAVY (calculated)

0.030

Length

584 amino acids

Sequence
(BLAST)

001: MATIPTTDSG LVLSSSALLR RTRRAASSVT ARLPAVARRR PQLLVRASAK EIAFDQGSRA ALQAGVEKLA AAVGVTLGPR GRNVVLDEFG TPKVVNDGVT
101: IARAIELADP MENAGASLIR EVASKTNDSA GDGTTTASVL AREIIKLGML SITSGANPVS VKKGIDKTVQ KLVEELEKKS RPVKGSGDIK AVAAISAGND
201: EFVGTMIAEA IDKVGPDGVL SIESSSSFET TVEVEEGMEL DRGYISPQFV TNLEKSIVEF ENARILVTDQ KISSIKEIIP LLEQTTQLRA PLLIIAEDVS
301: GEALATLVIN KLRGILNVAA IKAPGFGERR KALLQDIAIV TGAEYQSKDL GLLVEDTTVE QLGIARKVTI SSSSTTIIAD AASKDDIQAR IAQLKRELSQ
401: TDSTYDSEKL AERIAKLSGG VAVVKVGAST EAELEDRKLR IEDAKNATFA AIEEGIVPGG GAAYVHLSTF VPAIKETLDD PEERLGADII QKALVAPAAL
501: IAHNAGVEGE VIVDKIRESE WEFGYNAMAD KHENLVEAGV IDPAKVTRCA LQNAASVAGM VLTTQAIVVE KPKKAPAAAA AAAP

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.