Factsheet for Solyc11g069790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
plastid: 26371478
plastid: 28183294
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	98.13	98.13
VIT_06s0061g00270.t01	Wine grape	plastid	86.56	86.86
Bra000498.1-P	Field mustard	mitochondrion	78.91	86.73
KRH25068	Soybean	nucleus	85.54	86.13
CDY68896	Canola	cytosol	49.32	86.05
Bra034383.1-P	Field mustard	plastid	84.69	85.13
CDY30514	Canola	plastid	84.52	84.96
Os03t0859600-01	Rice	plastid	45.07	84.94
CDX83280	Canola	plastid	84.01	84.88
GSMUA_Achr11P...	Banana	plastid	84.52	84.81
Bra011985.1-P	Field mustard	plastid	84.18	84.62
CDY31190	Canola	plastid	84.01	84.3
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	82.48	83.91
Os12t0277500-01	Rice	plastid	82.48	83.91
AT2G28000.1	Thale cress	plastid	83.5	83.79
TraesCS2D01G049500.1	Wheat	golgi, plastid	82.31	83.74
GSMUA_AchrUn_...	Banana	plastid	81.97	83.54
EES19317	Sorghum	plastid	81.8	83.36
CDY04527	Canola	plastid	84.01	82.89
Solyc06g075010.2.1	Tomato	plastid	82.82	82.68
Zm00001d000399_P001	Maize	plastid	81.8	82.36
EER90466	Sorghum	plastid	79.76	80.86
CDX71396	Canola	plastid	72.11	80.15
TraesCS5D01G550700.1	Wheat	plastid	80.1	80.1
HORVU5Hr1G125130.1	Barley	plastid	79.93	80.07
TraesCS4A01G315500.2	Wheat	plastid	79.76	80.03
TraesCS5B01G563900.2	Wheat	plastid	79.93	79.93
Zm00001d034919_P001	Maize	plastid	79.08	79.62
CDX77147	Canola	plastid	84.01	79.42
KRH30612	Soybean	endoplasmic reticulum	79.93	79.26
HORVU2Hr1G011340.1	Barley	cytosol	22.11	78.79
HORVU2Hr1G109400.1	Barley	cytosol	12.24	78.26
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	82.14	77.4
Os03t0859700-00	Rice	extracellular, plastid	22.45	71.35
Zm00001d051252_P001	Maize	cytosol	23.13	66.34
Solyc02g068730.2.1	Tomato	plastid	60.71	61.23
Solyc01g028810.2.1	Tomato	plastid	47.79	46.91
Solyc03g120850.2.1	Tomato	plastid	48.13	46.78
Solyc05g010240.2.1	Tomato	plastid	40.99	44.55
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	42.86	43.52
Solyc05g053470.2.1	Tomato	plastid	42.01	43.11
Solyc03g121640.2.1	Tomato	plastid	37.93	38.92

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0007005
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043
GO:GO:0042026	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:K4DAD5	HAMAP:MF_00600	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF175	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	EnsemblPlantsGene:Solyc11g069790.1	EnsemblPlants:Solyc11g069790.1.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI00027693DB
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:54418951..54423859

Molecular Weight (calculated)

61959.5 Da

IEP (calculated)

4.930

GRAVY (calculated)

-0.031

Length

588 amino acids

Sequence
(BLAST)

001: MASANAISTA SIIPSPSKQG GLKNRKVSQL QGQRFGNKGA KNRFVVKACA KEIAFDQKSR SALQAGIDKL ADAVGLTLGP RGRNVVLDEY GTPKVVNDGV
101: TIARAIELPD AMENAGAALI REVASKTNDS AGDGTTTASV LAREIIKLGL LSVTSGANPV SLKRGIDKTV LGLIEELEKK ARPVKGRDDI KAIASISAGN
201: DESIGTMIAD AIDKVGPDGV LSIESSSSLE TTVHVEEGME IDRGYISPQF VTNPEKLISE FENARVLVTD QKISAIKDII PLLEKTTQLR APLLIIAEDI
301: TGEALATLVV NKLRGILNVA AIKAPGFGER RKALLQDIAI VTGAEYQATD LGLLVENTPV EALGIARKVT ITKDSTTIIA DAASKDEIQS RIAQLKKELS
401: ETDSVYDSEK LAERIAKLSG GVAVIKVGAA TEAELEDRKL RIEDAKNATF AAIEEGIVPG GGAAFVHLST YVPAIKEKIE DADERLGADI IQKALVAPAS
501: LIAQNAGVEG EVVVEKVKEA EWEMGYNAMT DQYENLVEAG VIDPAKVTRC ALQNSASVSG MVLTTQAIVV EKPKPKVAAP AAPQGLQV

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.