CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25068	Soybean	nucleus	91.23	92.64
Bra000498.1-P	Field mustard	mitochondrion	74.54	82.62
VIT_06s0061g00270.t01	Wine grape	plastid	80.94	81.91
CDX83280	Canola	plastid	79.6	81.1
Bra034383.1-P	Field mustard	plastid	79.93	81.03
CDY31190	Canola	plastid	79.76	80.72
CDY30514	Canola	plastid	79.6	80.68
Bra011985.1-P	Field mustard	plastid	79.43	80.51
CDX71396	Canola	plastid	71.67	80.34
Solyc11g069790.1.1	Tomato	plastid	79.26	79.93
GSMUA_Achr11P...	Banana	plastid	78.41	79.35
AT2G28000.1	Thale cress	plastid	78.41	79.35
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	78.58	79.25
GSMUA_AchrUn_...	Banana	plastid	76.9	79.03
CDY04527	Canola	plastid	79.26	78.86
Os12t0277500-01	Rice	plastid	76.56	78.55
CDY68896	Canola	cytosol	44.35	78.04
EES19317	Sorghum	plastid	75.89	77.99
HORVU5Hr1G125130.1	Barley	plastid	76.05	76.83
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	74.87	76.82
TraesCS2D01G049500.1	Wheat	golgi, plastid	74.7	76.64
TraesCS4A01G315500.2	Wheat	plastid	75.72	76.62
EER90466	Sorghum	plastid	74.87	76.55
TraesCS5D01G550700.1	Wheat	plastid	75.89	76.53
TraesCS5B01G563900.2	Wheat	plastid	75.72	76.36
Os03t0859600-01	Rice	plastid	40.13	76.28
Zm00001d000399_P001	Maize	plastid	75.04	76.2
CDX77147	Canola	plastid	79.76	76.05
Zm00001d034919_P001	Maize	plastid	74.2	75.34
Os03t0859700-00	Rice	extracellular, plastid	23.1	74.05
PGSC0003DMT400031301	Potato	plastid	72.51	73.01
Solyc06g075010.2.1	Tomato	plastid	72.34	72.84
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	74.7	70.99
Zm00001d051252_P001	Maize	cytosol	21.59	62.44
HORVU2Hr1G011340.1	Barley	cytosol	16.53	59.39
KRG89369	Soybean	plastid	53.79	54.16
KRH50415	Soybean	plastid	53.12	53.66
KRH43861	Soybean	plastid	45.87	45.95
KRH13605	Soybean	nucleus	45.53	45.69
HORVU2Hr1G109400.1	Barley	cytosol	6.91	44.57
KRH33513	Soybean	mitochondrion	41.15	42.43
KRG90277	Soybean	mitochondrion	41.15	42.43
KRH34594	Soybean	mitochondrion	40.81	41.94
KRG92192	Soybean	mitochondrion	40.13	41.39
KRH71056	Soybean	plastid	40.98	40.17
KRH75202	Soybean	plastid	40.64	39.83
KRH47114	Soybean	mitochondrion	36.76	37.98
KRH44140	Soybean	mitochondrion	36.09	37.28
KRH01342	Soybean	cytosol	7.42	27.5

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	EntrezGene:100806471	MapMan:19.1.7.1	Gene3D:3.30.260.10
Gene3D:3.50.7.10	EMBL:ACUP02007042	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1
EnsemblPlantsGene:GLYMA_11G195900	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829
GO:GO:0006457	GO:GO:0006458	GO:GO:0007005	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183	GO:GO:0051082
GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	UniProt:I1LL24	InterPro:IPR027409	InterPro:IPR027410
InterPro:IPR027413	EnsemblPlants:KRH30612	ProteinID:KRH30612	ProteinID:KRH30612.1	HAMAP:MF_00600	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF175	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000233C3CC	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:-:26969808..26973699

Molecular Weight (calculated)

63628.2 Da

IEP (calculated)

5.057

GRAVY (calculated)

-0.140

Length

593 amino acids

Sequence
(BLAST)

001: MASTNALSSA SILRSPNRQS LTRRANHNGR VNYRQPNSRF SVKASAKEIA FDQHSRSAMQ AGIDKLADAV GLTLGPRGRN VVLDEFGSPK VVNDGVTIAR
101: AIELPDPMEN AGAALIREVA SKTNDSAGDG TTTASVLARE IIKLGLLSVT SGANPVSLKR GIDKTVQGLV EELEKKARPV KGGDDIKAVA SISAGNDELI
201: GQMIAEAIDK VGPDGVLSIE SSSSFETTVE VEEGMEIDRG YISPQFVTNP EKLIVEFENA RVLITDQKIS AIKDIIPLLE KTTQLRAPLL IIAEDVTGEA
301: LATLVVNKLR GILNVAAIKA PGFGERRKAL LQDIAILTGA EFQASDLGLL VENTSVEQLG LARKITISKD STTIIADAAT KDELQARVAQ LKKELSQTDS
401: VYDTEKLAER IAKLSGGVAV IKVGAATETE LEDRKLRIED AKNATFAAIE EGIVPGGGTA LVHLSTHVPA LKDKLDDADE RLGADIVQKA LIAPAALIAQ
501: NAGIEGEVVV EKIKSGEWEV GYNAMVDRYE NLVEAGVIDP AKGEKYTDDF VRFCAKKVIH HELLQHFQHQ SIYMQADDVN PPSIRFEKIM GTR

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.