Factsheet for GSMUA_AchrUn_randomP08730_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plastid	88.21	86.86
Bra000498.1-P	Field mustard	mitochondrion	78.51	84.67
Os03t0859600-01	Rice	plastid	45.75	84.62
VIT_06s0061g00270.t01	Wine grape	plastid	85.27	83.96
Os12t0277500-01	Rice	plastid	84.06	83.91
EES19317	Sorghum	plastid	83.19	83.19
CDY68896	Canola	cytosol	48.53	83.09
KRH25068	Soybean	nucleus	83.88	82.88
TraesCSU01G009200.1	Wheat	mitochondrion, plastid	82.5	82.35
TraesCS2D01G049500.1	Wheat	golgi, plastid	82.32	82.18
Solyc11g069790.1.1	Tomato	plastid	83.54	81.97
Zm00001d000399_P001	Maize	plastid	82.67	81.68
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	83.02	81.46
CDX83280	Canola	plastid	82.15	81.44
Bra034383.1-P	Field mustard	plastid	82.15	81.03
TraesCS5D01G550700.1	Wheat	plastid	82.5	80.95
HORVU5Hr1G125130.1	Barley	plastid	82.32	80.92
TraesCS4A01G315500.2	Wheat	plastid	82.15	80.89
TraesCS5B01G563900.2	Wheat	plastid	82.32	80.78
CDY31190	Canola	plastid	81.98	80.72
EER90466	Sorghum	plastid	81.11	80.69
CDY30514	Canola	plastid	81.8	80.68
Bra011985.1-P	Field mustard	plastid	81.46	80.34
Zm00001d034919_P001	Maize	plastid	81.11	80.14
HORVU2Hr1G109400.1	Barley	cytosol	12.65	79.35
AT2G28000.1	Thale cress	plastid	80.07	78.84
CDY04527	Canola	plastid	81.28	78.69
HORVU2Hr1G011340.1	Barley	cytosol	22.36	78.18
KRH30612	Soybean	endoplasmic reticulum	79.03	76.9
CDX71396	Canola	plastid	70.19	76.56
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	82.67	76.44
Os03t0859700-00	Rice	extracellular, plastid	24.44	76.22
CDX77147	Canola	plastid	81.8	75.88
Solyc06g075010.2.1	Tomato	plastid	76.95	75.38
PGSC0003DMT400031301	Potato	plastid	76.43	74.87
Zm00001d051252_P001	Maize	cytosol	23.92	67.32
GSMUA_Achr3P27620_001	Banana	plastid	50.43	47.55
GSMUA_Achr9P23240_001	Banana	plastid	49.91	47.06
GSMUA_Achr10P...	Banana	mitochondrion	42.63	42.78
GSMUA_Achr1P11160_001	Banana	mitochondrion	42.46	42.39
GSMUA_Achr7P24090_001	Banana	cytosol	38.65	42.08
GSMUA_Achr9P18480_001	Banana	plastid	42.98	41.96
GSMUA_Achr11P...	Banana	plastid	49.05	40.66
GSMUA_Achr10P...	Banana	cytosol	9.71	40.58
GSMUA_Achr8P14600_001	Banana	plastid	18.2	39.92
GSMUA_Achr10P...	Banana	cytosol	62.91	29.61

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_AchrUn_randomG08730_001
EnsemblPlants:GSMUA_AchrUn_randomP08730_001	EnsemblPlants:GSMUA_AchrUn_randomT08730_001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
UniProt:M0U7I3	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF175	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI000295B12C	SEG:seg	:	:	:	:

Description

RuBisCO large subunit-binding protein subunit alpha, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG08730_001]

Coordinates

chrchrUn_random:-:40171858..40180839

Molecular Weight (calculated)

60897.4 Da

IEP (calculated)

5.047

GRAVY (calculated)

-0.017

Length

577 amino acids

Sequence
(BLAST)

001: MAAANAISVA SFIGSPRQRS GLRRRASGGY KPMVVRAKAK EIAFDQSSRS SLQAGVEKLA DAVGVTLGPR GRNVVLDEFG NPKVVNDGVT IARSIELADP
101: MENAGAALIR EVASKTNDSA GDGTTTASVL AREIIKLGLL SVTSGANPVS VKKGIDKTVQ KLVEELEKKA RPVKGRGDIE AVATISAGND EFVGNMIADA
201: IDKVGPDGVL SIESSSSFET TVDVEEGMEI DRGYISPQFV TNLEKLIVEF ENAKVLVTDQ KISTIKEIIP LLEKVTQLRA PLLIIAEDVT GEALATLVVN
301: KLRGILNVAA IKAPGFGERR KAILQDIAIM TGAEFQAKDL GLLIESVSVE QLGTARKVTI SQNSTTIISD AATKDEIQSR IAQLKKELAE TDSVYDSEKL
401: AERIAKLSGG VAVIKVGAAT ETELEDRKLR IEDAKNATFA AIEEGIVPGG GAAYVHLSAS VPAIKKKLED HDELLGADIV QKALVAPAAL IAQNAGVEGE
501: VVVEKIKDGE WEIGYNAMTD KYENLLEAGV IDPAKVTRCA LQNAASIAGM LLTTQAIVVE KPKKKSPSNP PAKGLAV

Best Arabidopsis Sequence Match ( AT2G28000.1 )
(BLAST)

001: MASANALSSA SVLCSSRQSK LGGGNQQQGQ RVSYNKRTIR RFSVRANVKE IAFDQHSRAA LQAGIDKLAD CVGLTLGPRG RNVVLDEFGS PKVVNDGVTI
101: ARAIELPNAM ENAGAALIRE VASKTNDSAG DGTTTASILA REIIKHGLLS VTSGANPVSL KRGIDKTVQG LIEELQKKAR PVKGRDDIRA VASISAGNDD
201: LIGSMIADAI DKVGPDGVLS IESSSSFETT VEVEEGMEID RGYISPQFVT NPEKLLAEFE NARVLITDQK ITAIKDIIPI LEKTTQLRAP LLIIAEDVTG
301: EALATLVVNK LRGVLNVVAV KAPGFGERRK AMLQDIAILT GAEYLAMDMS LLVENATIDQ LGIARKVTIS KDSTTLIADA ASKDELQARI AQLKKELFET
401: DSVYDSEKLA ERIAKLSGGV AVIKVGAATE TELEDRKLRI EDAKNATFAA IEEGIVPGGG AALVHLSTVI PAIKETFEDA DERLGADIVQ KALLSPAALI
501: AQNAGVEGEV VVEKIMFSDW ENGYNAMTDT YENLFEAGVI DPAKVTRCAL QNAASVAGMV LTTQAIVVDK PKPKAPAAAA PEGLMV

Arabidopsis Description

CPN60A1SLP [Source:UniProtKB/TrEMBL;Acc:A0A178VZW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.