Factsheet for GSMUA_Achr8P14600_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P27620_001	Banana	plastid	73.76	31.7
GSMUA_Achr9P23240_001	Banana	plastid	73.76	31.7
GSMUA_Achr11P...	Banana	plastid	80.99	30.6
GSMUA_Achr9P18480_001	Banana	plastid	50.95	22.67
GSMUA_AchrUn_...	Banana	plastid	39.92	18.2
GSMUA_Achr11P...	Banana	plastid	39.92	17.92
GSMUA_Achr10P...	Banana	mitochondrion	36.5	16.7
GSMUA_Achr1P11160_001	Banana	mitochondrion	36.12	16.44
GSMUA_Achr7P24090_001	Banana	cytosol	28.14	13.96
GSMUA_Achr10P...	Banana	cytosol	4.94	9.42
GSMUA_Achr10P...	Banana	cytosol	34.22	7.34

Protein Annotations

Gene3D:1.10.560.10	MapMan:35.1	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr8G14600_001
EnsemblPlants:GSMUA_Achr8P14600_001	EnsemblPlants:GSMUA_Achr8T14600_001	InterPro:IPR027413	UniProt:M0TQG3	PFAM:PF00118	PRINTS:PR00298
PANTHER:PTHR11353	PANTHER:PTHR11353:SF96	SUPFAM:SSF48592	UniParc:UPI000294AED1	SEG:seg	:

Description

RuBisCO large subunit-binding protein subunit beta, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G14600_001]

Coordinates

chr8:+:11974121..11975917

Molecular Weight (calculated)

28152.1 Da

IEP (calculated)

9.884

GRAVY (calculated)

-0.119

Length

263 amino acids

Sequence
(BLAST)

001: MASTFSTMST IGSLSATNCL SANKASVEKF SSLSSVSSNS LSSGRQNLKM QKRCNSRIRA MAKELHFNKD VSTIKKLQTG VNKLADLVGV TLGPKGRNVV
101: LESKYGSPNM PKRYLIIRVE LEDPVENIGA KLVRQAAAKT NDLAGDGTTT SVVLAQGLIA EGVKVVAAGS NPIQITRGIE KTTKALVAEL KLMSKEIEDS
201: ELADVAAVSA GNKYEIGNMI AEAMIVAKVV FGFLSFMAAE QEYEKEKLNE RIAKLSGNVH SEH

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.