Factsheet for GSMUA_Achr11P06270_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P23240_001	Banana	plastid	78.3	89.05
GSMUA_Achr3P27620_001	Banana	plastid	78.16	88.89
VIT_06s0004g00240.t01	Wine grape	plastid	76.15	87.17
AT3G13470.1	Thale cress	plastid	74.14	86.58
Bra001507.1-P	Field mustard	plastid	73.13	86.27
CDX82537	Canola	plastid	72.56	86.03
CDX75715	Canola	cytosol	69.54	85.97
CDX75713	Canola	plastid	73.13	85.83
KRH13605	Soybean	nucleus	72.84	85.79
KRH43861	Soybean	plastid	72.84	85.64
VIT_09s0002g03930.t01	Wine grape	plastid	74.57	85.22
AT1G55490.3	Thale cress	plastid	73.42	85.17
Solyc01g028810.2.1	Tomato	plastid	73.28	85.14
PGSC0003DMT400061700	Potato	extracellular	72.99	84.81
CDY08245	Canola	plastid	72.7	84.33
AT5G56500.2	Thale cress	plastid	72.13	84.09
Bra028922.1-P	Field mustard	plastid	71.12	83.76
Bra011919.1-P	Field mustard	plastid	72.99	83.55
CDY11918	Canola	plastid	71.26	83.36
CDY32855	Canola	plastid	70.83	83.0
CDY36809	Canola	plastid	70.83	81.22
GSMUA_Achr8P14600_001	Banana	plastid	30.6	80.99
CDY26100	Canola	plastid	72.7	80.57
PGSC0003DMT400006501	Potato	plastid	69.4	79.83
Solyc03g120850.2.1	Tomato	plastid	69.25	79.67
Bra030858.1-P	Field mustard	cytosol	74.57	75.33
CDY02438	Canola	cytosol	74.14	74.03
CDX72433	Canola	endoplasmic reticulum	33.05	72.78
CDY32775	Canola	cytosol	8.33	68.24
CDY23605	Canola	cytosol	42.1	67.51
CDY10557	Canola	endoplasmic reticulum, plastid	75.86	63.69
GSMUA_Achr9P18480_001	Banana	plastid	52.59	61.93
CDY56074	Canola	plastid	41.67	61.05
CDY43988	Canola	cytosol	42.53	57.59
Bra027431.1-P	Field mustard	cytosol	42.67	57.23
CDY10302	Canola	extracellular	4.89	52.31
GSMUA_AchrUn_...	Banana	plastid	40.66	49.05
CDX86994	Canola	mitochondrion, plastid	48.99	48.58
GSMUA_Achr11P...	Banana	plastid	40.8	48.46
GSMUA_Achr1P11160_001	Banana	mitochondrion	38.07	45.85
GSMUA_Achr10P...	Banana	mitochondrion	37.79	45.74
GSMUA_Achr7P24090_001	Banana	cytosol	33.19	43.58
CDY40825	Canola	endoplasmic reticulum, vacuole	12.79	41.78
GSMUA_Achr10P...	Banana	cytosol	7.18	36.23
CDX85007	Canola	cytosol, plastid	38.36	26.59
GSMUA_Achr10P...	Banana	cytosol	38.07	21.61

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSMUA_Achr11G06270_001
EnsemblPlants:GSMUA_Achr11P06270_001	EnsemblPlants:GSMUA_Achr11T06270_001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
UniProt:M0RPV7	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353
PANTHER:PTHR11353:SF96	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI000295CCB2	SEG:seg	:	:	:	:

Description

RuBisCO large subunit-binding protein subunit beta, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G06270_001]

Coordinates

chr11:-:4876725..4882444

Molecular Weight (calculated)

74242.3 Da

IEP (calculated)

8.369

GRAVY (calculated)

-0.167

Length

696 amino acids

Sequence
(BLAST)

001: MTISFPGPPE SSIIGKGGKR TGSVFRRSRS APCESLQIKP HLCLSPAAVC SVRKQSIIHA PNPTPCHHDH LARPRKLAQL SPFSPPKSSR GRSTMSTIGS
101: LGAATCLHAD KASAEKFSKF SSLASISSGS SSSRRQNLLM QKRCNSRIRA MAKELYFNKD GSAIKKLQTG VNKLADLVGV TLGPKGRNVV LESKYGSPRI
201: VNDGVTVAKE VELEDPVENI GAKLVRQAAA KTNDLAGDGT TTSVVLAQGL IAEGVKVVAA GANPVQITRG IEKTTKALVA ELKLMSKEVE DSELADVAAV
301: SAGNNYEIGN MIAEAMSKVG RKGVVTLEEG KSAENNLYVV EGMQFDRGYI SPYFVTDSEK MSVEYENCKL LLVDKKITNA RDLINVLEDA IRGGYPVVII
401: AEDIEQEALA TLVVNKLRGS LKIAALKAPG FGERKSQYLD DIAILSGATV IRDEVGLSLD KAGKEVLGTA AKVVLTKETT TIVGDGSSQE EVTKRVAQIH
501: NLIEASEQEY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVEEG IVVGGGCTLL RLASKVDAIK ETLENDEQKV GADIVRRALS
601: YPLKLIAKNA GVNGSVVVEK VLSNDDFKFG YNAATGNYED LMAAGIIDPT KVVRCCLEHA ASVSKTFLTS DVVMVDIKEP ESVPAGNPMN NSGYGY

Best Arabidopsis Sequence Match ( AT3G13470.1 )
(BLAST)

001: MASTFTATSS LGSLLAPNAI KLSSATSISS SSFGRRHNVC VRRSRPAIVC AAKELHFNKD GTTIRKLQTG VNKLADLVGV TLGPKGRNVV LESKYGSPRI
101: VNDGVTVARE VELEDPVENI GAKLVRQAAA KTNDLAGDGT TTSVVLAQGF IAEGVKVVAA GANPVLITRG IEKTAKALVN ELKLMSKEVE DSELADVAAV
201: SAGNNHEVGS MIAEAMSKVG RKGVVTLEEG KSAENNLYVV EGMQFDRGYI SPYFVTDSEK MSVEYDNCKL LLVDKKVTNA RDLVGVLEDA IRGGYPILII
301: AEDIEQEALA TLVVNKLRGT LKIAALKAPG FGERKSQYLD DIAILTGATV IREEVGLSLD KAGKEVLGNA SKVVLTKEMT TIVGDGTTQE AVNKRVVQIR
401: NLIEQAEQDY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVEEG IVVGGGCTLL RLASKVDAIK DTLENDEEKV GAEIVKRALS
501: YPLKLIAKNA GVNGSVVSEK VLANDNVKFG YNAATGKYED LMAAGIIDPT KVVRCCLEHA ASVAKTFLMS DCVVVEIPEP EPVPAGNPMD NSGYGY

Arabidopsis Description

CPN60B2Chaperonin 60 subunit beta 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LJE4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.