Factsheet for PGSC0003DMT400061700

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117
extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g028810.2.1	Tomato	plastid	99.67	99.67
VIT_06s0004g00240.t01	Wine grape	plastid	89.98	88.65
CDX75713	Canola	plastid	87.65	88.53
AT3G13470.1	Thale cress	plastid	87.65	88.09
KRH43861	Soybean	plastid	86.98	88.01
Bra001507.1-P	Field mustard	plastid	86.64	87.97
CDX82537	Canola	plastid	85.98	87.73
KRH13605	Soybean	nucleus	86.48	87.65
AT5G56500.2	Thale cress	plastid	86.81	87.1
CDX75715	Canola	cytosol	81.64	86.86
Zm00001d035937_P001	Maize	plastid	83.81	86.7
Bra028922.1-P	Field mustard	plastid	85.48	86.63
EER89076	Sorghum	plastid	83.64	86.53
CDY32855	Canola	plastid	85.31	86.03
TraesCS6B01G012000.1	Wheat	cytosol	58.93	85.89
CDY11918	Canola	plastid	85.31	85.88
AT1G55490.3	Thale cress	plastid	85.98	85.83
CDY08245	Canola	plastid	85.81	85.67
TraesCS4A01G452700.2	Wheat	plastid	82.97	85.1
HORVU7Hr1G006490.2	Barley	cytosol	78.63	85.02
Bra011919.1-P	Field mustard	plastid	86.14	84.87
Os06t0114000-02	Rice	plastid	84.81	84.53
CDY36809	Canola	plastid	84.97	83.86
Zm00001d045544_P002	Maize	plastid	83.97	83.83
GSMUA_Achr9P23240_001	Banana	plastid	85.48	83.66
GSMUA_Achr3P27620_001	Banana	plastid	85.31	83.5
PGSC0003DMT400006501	Potato	plastid	83.14	82.31
TraesCS7A01G036200.2	Wheat	golgi	84.97	82.1
CDY26100	Canola	plastid	85.81	81.85
HORVU4Hr1G076680.1	Barley	cytosol	27.05	81.82
TraesCS6A01G006400.1	Wheat	golgi	81.64	81.77
TraesCS6B01G011800.1	Wheat	plastid	80.8	81.62
TraesCS6D01G009100.1	Wheat	golgi	81.3	81.44
Os02t0102900-01	Rice	plastid	80.97	81.1
TraesCS6B01G012100.3	Wheat	plastid	81.14	81.0
TraesCS7D01G032800.1	Wheat	cytosol	84.81	80.76
HORVU5Hr1G074160.1	Barley	cytosol	26.21	80.51
HORVU2Hr1G107410.2	Barley	cytosol	26.88	80.5
KXG29249	Sorghum	plastid	81.14	80.46
Zm00001d054089_P002	Maize	plastid	80.47	78.12
CDY32775	Canola	cytosol	11.02	77.65
Zm00001d016540_P001	Maize	cytosol	13.36	76.92
Bra030858.1-P	Field mustard	cytosol	86.98	75.62
TraesCS6B01G039300.2	Wheat	plastid	75.29	75.42
TraesCS6D01G031400.1	Wheat	plastid	75.13	75.25
TraesCS6A01G028100.1	Wheat	plastid	75.13	75.25
HORVU6Hr1G005220.3	Barley	plastid	74.29	74.41
CDY02438	Canola	cytosol	86.48	74.32
GSMUA_Achr11P...	Banana	plastid	84.81	72.99
CDX72433	Canola	endoplasmic reticulum	38.4	72.78
Zm00001d053279_P001	Maize	mitochondrion	18.86	71.97
Zm00001d046709_P001	Maize	mitochondrion	18.53	70.7
HORVU6Hr1G000180.2	Barley	plastid	75.63	69.59
CDY23605	Canola	cytosol	50.42	69.59
HORVU4Hr1G066820.2	Barley	cytosol	26.21	66.81
Zm00001d037526_P001	Maize	plastid	19.37	65.54
PGSC0003DMT400064673	Potato	cytosol	47.91	63.64
CDY56074	Canola	plastid	49.75	62.74
CDY10557	Canola	endoplasmic reticulum, plastid	86.64	62.61
CDY10302	Canola	extracellular	6.51	60.0
CDY43988	Canola	cytosol	50.92	59.34
Bra027431.1-P	Field mustard	cytosol	51.09	58.96
CDX86994	Canola	mitochondrion, plastid	57.43	49.0
PGSC0003DMT400002933	Potato	cytosol, extracellular, plastid	46.74	47.62
PGSC0003DMT400031301	Potato	plastid	45.91	46.69
PGSC0003DMT400027020	Potato	cytosol	41.24	46.08
PGSC0003DMT400006642	Potato	cytosol	39.07	45.79
PGSC0003DMT400030265	Potato	mitochondrion	43.91	45.74
PGSC0003DMT400069855	Potato	mitochondrion	43.74	45.72
CDY40825	Canola	endoplasmic reticulum, vacuole	15.03	42.25
CDX85007	Canola	cytosol, plastid	46.08	27.49
Os02t0103100-01	Rice	plasma membrane, vacuole	0.33	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	EntrezGene:102577525	MapMan:19.1.7.1	Gene3D:3.30.260.10
Gene3D:3.50.7.10	ProteinID:AAB39827	ProteinID:AAB39827.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
UniProt:M1C7V7	HAMAP:MF_00600	PFAM:PF00118	EnsemblPlantsGene:PGSC0003DMG400024011	PGSC:PGSC0003DMG400024011	EnsemblPlants:PGSC0003DMT400061700
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF164	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EMBL:U46136	UniParc:UPI000296DA19	RefSeq:XP_015169779.1
RefSeq:XP_015169780.1	SEG:seg	:	:	:	:

Description

Chaperonin-60 beta subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400024011]

Coordinates

chr1:-:18390097..18395185

Molecular Weight (calculated)

63037.8 Da

IEP (calculated)

5.560

GRAVY (calculated)

-0.063

Length

599 amino acids

Sequence
(BLAST)

001: MASTFAGMSS AGPLAAPSTS SNKLSSVANI SSTSFGSKRN VALRKSRRPT ILAAAKELHF NKDGSAIKKL QNGVNKLADL VGVTLGPKGR NVVLESKYGA
101: PKIVNDGVTV AREVELEDPV ENIGAKLVRQ AAAKTNDLAG DGTTTSVVLA QGLIAEGVKV VAAGANPVLI TRGIEKTAKA LVAELKNMSK EVEDSELADV
201: AAVSAGNNLE VGSMIAEAMS KVGRKGVVTL EEGKSAENSL RVVEGMQFER GYVSPYFVTD SEKMSVEYEN CKLLLVDKKI TNARDLVNVL EDAIRNGYPI
301: LIIAEDIEQE ALATLVVNKL RGALKVAALK APGFGERKSQ YLDDIATLTG GTVIREELGL TLDKADKEVL GHAAKVVLTK DATTIVGDGS TQEAVNKRVA
401: QIKNLIEAAD QDYEKEKLNE RIAKLSGGVA VIQVGAQTET ELKEKKLRVE DALNATKAAV EEGIVVGGGC TLLRLAAKVD AIKGTLANDE EKVGADIVKR
501: ALSYPLKLIA KNAGVNGSVV SEKVLSSDDP KFGYNAATGN YEDLMAAGII DPTKVVRCCL EHAASVAKTF LMSDCVVVEI KEPEAAVAGN PMDNSGYGY

Best Arabidopsis Sequence Match ( AT3G13470.1 )
(BLAST)

001: MASTFTATSS LGSLLAPNAI KLSSATSISS SSFGRRHNVC VRRSRPAIVC AAKELHFNKD GTTIRKLQTG VNKLADLVGV TLGPKGRNVV LESKYGSPRI
101: VNDGVTVARE VELEDPVENI GAKLVRQAAA KTNDLAGDGT TTSVVLAQGF IAEGVKVVAA GANPVLITRG IEKTAKALVN ELKLMSKEVE DSELADVAAV
201: SAGNNHEVGS MIAEAMSKVG RKGVVTLEEG KSAENNLYVV EGMQFDRGYI SPYFVTDSEK MSVEYDNCKL LLVDKKVTNA RDLVGVLEDA IRGGYPILII
301: AEDIEQEALA TLVVNKLRGT LKIAALKAPG FGERKSQYLD DIAILTGATV IREEVGLSLD KAGKEVLGNA SKVVLTKEMT TIVGDGTTQE AVNKRVVQIR
401: NLIEQAEQDY EKEKLNERIA KLSGGVAVIQ VGAQTETELK EKKLRVEDAL NATKAAVEEG IVVGGGCTLL RLASKVDAIK DTLENDEEKV GAEIVKRALS
501: YPLKLIAKNA GVNGSVVSEK VLANDNVKFG YNAATGKYED LMAAGIIDPT KVVRCCLEHA ASVAKTFLMS DCVVVEIPEP EPVPAGNPMD NSGYGY

Arabidopsis Description

CPN60B2Chaperonin 60 subunit beta 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LJE4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.