Factsheet for Os06t0114000-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289
extracellular: 23159799
nucleus: 24133045
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035937_P001	Maize	plastid	93.18	96.72
EER89076	Sorghum	plastid	93.18	96.72
TraesCS4A01G452700.2	Wheat	plastid	92.18	94.86
Zm00001d045544_P002	Maize	plastid	93.51	93.67
TraesCS7A01G036200.2	Wheat	golgi	94.18	91.29
HORVU7Hr1G006490.2	Barley	cytosol	84.03	91.16
TraesCS7D01G032800.1	Wheat	cytosol	94.18	89.98
Zm00001d016540_P001	Maize	cytosol	15.31	88.46
Bra001507.1-P	Field mustard	plastid	84.86	86.44
GSMUA_Achr9P23240_001	Banana	plastid	87.85	86.27
GSMUA_Achr3P27620_001	Banana	plastid	87.85	86.27
CDX82537	Canola	plastid	84.19	86.2
CDX75713	Canola	plastid	84.86	86.0
CDX75715	Canola	cytosol	80.53	85.97
AT3G13470.1	Thale cress	plastid	85.19	85.91
VIT_06s0004g00240.t01	Wine grape	plastid	85.86	84.87
AT1G55490.3	Thale cress	plastid	84.69	84.83
PGSC0003DMT400061700	Potato	extracellular	84.53	84.81
Solyc01g028810.2.1	Tomato	plastid	84.19	84.47
Os02t0102900-01	Rice	plastid	83.69	84.11
Zm00001d053279_P001	Maize	mitochondrion	21.96	84.08
KRH43861	Soybean	plastid	82.53	83.78
KRH13605	Soybean	nucleus	82.36	83.76
CDY08245	Canola	plastid	83.53	83.67
CDY32855	Canola	plastid	82.36	83.33
VIT_09s0002g03930.t01	Wine grape	plastid	84.36	83.25
AT5G56500.2	Thale cress	plastid	82.7	83.25
Bra011919.1-P	Field mustard	plastid	83.86	82.89
Bra028922.1-P	Field mustard	plastid	81.36	82.74
CDY11918	Canola	plastid	81.36	82.18
Zm00001d046709_P001	Maize	mitochondrion	21.46	82.17
Solyc03g120850.2.1	Tomato	plastid	81.7	81.16
PGSC0003DMT400006501	Potato	plastid	81.36	80.83
CDY26100	Canola	plastid	84.03	80.41
CDY36809	Canola	plastid	80.87	80.07
Zm00001d037526_P001	Maize	plastid	22.3	75.71
Bra030858.1-P	Field mustard	cytosol	84.69	73.88
CDY02438	Canola	cytosol	84.19	72.6
CDY32775	Canola	cytosol	10.15	71.76
CDX72433	Canola	endoplasmic reticulum	37.44	71.2
CDY23605	Canola	cytosol	48.25	66.82
CDY10557	Canola	endoplasmic reticulum, plastid	84.36	61.16
Os04t0443900-01	Rice	plastid	59.73	61.05
CDY56074	Canola	plastid	48.25	61.05
CDY10302	Canola	extracellular	6.32	58.46
CDY43988	Canola	cytosol	48.25	56.42
Bra027431.1-P	Field mustard	cytosol	48.42	56.07
Os03t0859600-01	Rice	plastid	26.29	50.64
Os12t0277500-01	Rice	plastid	47.59	49.48
CDX86994	Canola	mitochondrion, plastid	56.91	48.72
Os10t0462900-01	Rice	mitochondrion	44.26	46.34
Os03t0859700-00	Rice	extracellular, plastid	13.98	45.41
Os03t0143400-01	Rice	mitochondrion	42.93	44.71
Os05t0540300-01	Rice	mitochondrion	42.1	43.55
CDY40825	Canola	endoplasmic reticulum, vacuole	14.64	41.31
Os09t0563300-02	Rice	plastid	37.27	38.36
CDX85007	Canola	cytosol, plastid	44.09	26.39
Os02t0103100-01	Rice	plasma membrane, vacuole	0.33	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EntrezGene:4339910	EMBL:AK101334	ProteinID:BAA92724.1	ProteinID:BAF18515.1	ProteinID:BAS95818.1	ProteinID:BAS95819.1
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	EMBL:EU325985	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458
GO:GO:0007005	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043
GO:GO:0042026	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	EnsemblPlantsGene:Os06g0114000	EnsemblPlants:Os06t0114000-02
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF8	UniProt:Q9LWT6
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI00000A4BF1
RefSeq:XP_015642765.1	RefSeq:XP_015642766.1	SEG:seg	:	:	:

Description

chaperonin 60 beta subunit 1Hypothetical gene. (Os06t0114000-01);Similar to 60 kDa chaperonin (Protein Cpn60) (groEL protein) (63 kDa stress protein) (GSP63). (Os06t0114000-02);Similar to RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment). (Os06t0114000-03);Similar to RuBisCo subunit binding-protein beta subunit (Fragment). (Os06t0114000-04)

Coordinates

chr6:-:811046..816534

Molecular Weight (calculated)

64089.0 Da

IEP (calculated)

5.325

GRAVY (calculated)

-0.115

Length

601 amino acids

Sequence
(BLAST)

001: MASTFGATST VGLMAAPTGI VSDKKPSSLS SVSSVSVASR PRNARLQRKC NFRVKAAKEL YFNKDGSAIK KLQTGVNKLA DLVGVTLGPK GRNVVLESKY
101: GSPRIVNDGV TVAREVELED PVENIGAKLV RQAAAKTNDL AGDGTTTSVV LAQGLIAEGV KVVAAGANPV QITRGIEKTA KALVEELKKL SKEVEDSELA
201: DVAAVSAGNN YEIGNMIAEA MSKVGRKGVV TLEEGRSSEN NLYVVEGMQF ERGYISPYFV TDSEKMSAEY ENCKLLLVDK KITNARDLIN VLEEAIRGAY
301: PILIIAEDIE QEALATLVVN KLRGSLKIAA IKAPGFGERK TQYLDDIAIL TGATVIRDEV GLSLDKADKS VLGTAAKVVL NKESTTIVGD GSTQEEVTKR
401: VAQIKNLIEA AEQEYEKEKL NERIAKLAGG VAVIQVGAQT ETELKEKKLR VEDALNATKA AVEEGIVVGG GCTLLRLAAR VDAIKDNLEN DEQKVGAEIV
501: RRALSYPLKL IAKNAGVNGS VVTEKVLSND NFKFGYNAAT GQYEDLMAAG IIDPTKVVRC CLEHAASVAK TFLTSDVVVV EIKEPEPAPV TNPMDNSGYG
601: Y

Best Arabidopsis Sequence Match ( AT1G55490.5 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.