Factsheet for TraesCS4A01G452700.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G036200.2	Wheat	golgi	99.32	93.55
EER89076	Sorghum	plastid	91.78	92.57
Zm00001d035937_P001	Maize	plastid	91.78	92.57
TraesCS7D01G032800.1	Wheat	cytosol	99.66	92.53
Os06t0114000-02	Rice	plastid	94.86	92.18
HORVU7Hr1G006490.2	Barley	cytosol	87.16	91.88
Zm00001d045544_P002	Maize	plastid	92.12	89.67
Zm00001d016540_P001	Maize	cytosol	15.07	84.62
GSMUA_Achr9P23240_001	Banana	plastid	86.99	83.01
GSMUA_Achr3P27620_001	Banana	plastid	86.99	83.01
PGSC0003DMT400061700	Potato	extracellular	85.1	82.97
CDX75713	Canola	plastid	84.25	82.97
Bra001507.1-P	Field mustard	plastid	83.73	82.88
CDX82537	Canola	plastid	83.22	82.79
CDX75715	Canola	cytosol	79.79	82.77
Solyc01g028810.2.1	Tomato	plastid	84.76	82.64
TraesCS6A01G006400.1	Wheat	golgi	84.08	82.11
VIT_06s0004g00240.t01	Wine grape	plastid	85.45	82.07
AT3G13470.1	Thale cress	plastid	83.73	82.05
KRH43861	Soybean	plastid	83.05	81.93
AT1G55490.3	Thale cress	plastid	84.08	81.83
KRH13605	Soybean	nucleus	82.53	81.56
CDY08245	Canola	plastid	82.88	80.67
CDY32855	Canola	plastid	82.02	80.64
VIT_09s0002g03930.t01	Wine grape	plastid	84.08	80.62
AT5G56500.2	Thale cress	plastid	82.19	80.4
Bra028922.1-P	Field mustard	plastid	81.16	80.2
Bra011919.1-P	Field mustard	plastid	83.22	79.93
CDY11918	Canola	plastid	81.34	79.83
Zm00001d053279_P001	Maize	mitochondrion	21.23	78.98
Solyc03g120850.2.1	Tomato	plastid	81.68	78.84
PGSC0003DMT400006501	Potato	plastid	81.68	78.84
CDY36809	Canola	plastid	80.82	77.76
Zm00001d046709_P001	Maize	mitochondrion	20.89	77.71
CDY26100	Canola	plastid	83.22	77.39
TraesCS6A01G028100.1	Wheat	plastid	77.91	76.09
CDY32775	Canola	cytosol	10.62	72.94
Zm00001d037526_P001	Maize	plastid	21.75	71.75
Bra030858.1-P	Field mustard	cytosol	83.9	71.12
CDY02438	Canola	cytosol	83.56	70.01
CDX72433	Canola	endoplasmic reticulum	36.64	67.72
CDY23605	Canola	cytosol	47.6	64.06
CDY10557	Canola	endoplasmic reticulum, plastid	83.73	58.99
CDY56074	Canola	plastid	47.6	58.53
CDY10302	Canola	extracellular	6.34	56.92
CDY43988	Canola	cytosol	47.77	54.28
Bra027431.1-P	Field mustard	cytosol	47.95	53.95
TraesCS2A01G311700.1	Wheat	plastid	59.25	53.4
TraesCS4A01G315500.2	Wheat	plastid	47.6	47.44
CDX86994	Canola	mitochondrion, plastid	55.48	46.15
TraesCS1A01G145000.1	Wheat	mitochondrion	44.69	45.47
TraesCS4A01G409100.1	Wheat	mitochondrion	44.35	44.97
TraesCS1A01G361400.1	Wheat	mitochondrion	43.15	43.52
CDY40825	Canola	endoplasmic reticulum, vacuole	15.41	42.25
TraesCS5A01G366800.1	Wheat	plastid	38.36	37.9
CDX85007	Canola	cytosol, plastid	44.01	25.6

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF8	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	EnsemblPlantsGene:TraesCS4A01G452700	EnsemblPlants:TraesCS4A01G452700.2	TIGR:cd03344	SEG:seg

Description

No Description!

Coordinates

chr4A:-:717738477..717742320

Molecular Weight (calculated)

62339.3 Da

IEP (calculated)

5.792

GRAVY (calculated)

-0.053

Length

584 amino acids

Sequence
(BLAST)

001: MASPFGATST VGLMAAPTGL VSDKKPFSLS SISLADRSRH VRLQRKCNFR VKAAKELYFN KDGSATKKLQ VGVNKLADLV GVTLGPKGRN VVLESKYGSP
101: KIVNDGVTVA REVELEDPVE NIGAKLVRQA AAKTNDLAGD GTTTSVVLAQ GLIAEGVKVI AAGANPVQIT RGIEKTAKAL VLELKKMSKE VEDSELADVA
201: AVSAGNNYEI GNMIAEAMSK VGRKGVVTLE EGRSSENNLY VVEGMQFERG YISPYFVTDS EKMTTEYENC KLLLVDKKIT NARDLINVLE EAIRGQYPIL
301: IIAEDIEQEA LATLVVNKLR GSLKICAIKA PGFGERKTQY LDDIAILTGG TVIRDEVGLT LDKADSTVLG TAAKVVLTKE STTIVGDGST QEEVTKRVAQ
401: IKNLIEAAEQ DYEKEKLNER IAKLAGGVAV IQVGAQTETE LKEKKLRVED ALNATKAAVE EGIVVGGGCT LLRLAAKVGA EIVRRALCYP LKLIAKNAGV
501: NGSVVTEKVL SNDNFKFGYN AATGQYEDLM AAGIIDPTKV VRCCLEHAAS VAKTFLTSDV VVVEIKEPEA APLANPMDNS GFGY

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.