Factsheet for AT1G55490.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08245	Canola	plastid	96.5	96.5
Bra011919.1-P	Field mustard	plastid	96.5	95.23
AT3G13470.1	Thale cress	plastid	92.67	93.29
CDY26100	Canola	plastid	96.5	92.2
Zm00001d035937_P001	Maize	plastid	84.33	87.39
KRH13605	Soybean	nucleus	85.83	87.14
AT5G56500.2	Thale cress	plastid	86.33	86.77
EER89076	Sorghum	plastid	83.67	86.7
KRH43861	Soybean	plastid	85.5	86.66
VIT_06s0004g00240.t01	Wine grape	plastid	87.33	86.18
TraesCS6B01G012000.1	Wheat	cytosol	59.0	86.13
PGSC0003DMT400061700	Potato	extracellular	85.83	85.98
Solyc01g028810.2.1	Tomato	plastid	85.83	85.98
HORVU7Hr1G006490.2	Barley	cytosol	78.67	85.2
GSMUA_Achr3P27620_001	Banana	plastid	86.5	84.8
Os06t0114000-02	Rice	plastid	84.83	84.69
GSMUA_Achr9P23240_001	Banana	plastid	86.0	84.31
Zm00001d045544_P002	Maize	plastid	84.17	84.17
TraesCS4A01G452700.2	Wheat	plastid	81.83	84.08
Bra030858.1-P	Field mustard	cytosol	96.33	83.89
HORVU4Hr1G076680.1	Barley	cytosol	27.5	83.33
HORVU5Hr1G074160.1	Barley	cytosol	26.83	82.56
CDY02438	Canola	cytosol	95.83	82.5
TraesCS6A01G006400.1	Wheat	golgi	81.83	82.11
Os02t0102900-01	Rice	plastid	81.33	81.61
HORVU2Hr1G107410.2	Barley	cytosol	27.17	81.5
TraesCS6B01G011800.1	Wheat	plastid	80.5	81.45
TraesCS6D01G009100.1	Wheat	golgi	81.17	81.44
TraesCS7A01G036200.2	Wheat	golgi	83.83	81.13
TraesCS6B01G012100.3	Wheat	plastid	80.67	80.67
KXG29249	Sorghum	plastid	81.0	80.46
TraesCS7D01G032800.1	Wheat	cytosol	83.83	79.97
CDX72433	Canola	endoplasmic reticulum	41.0	77.85
Zm00001d054089_P002	Maize	plastid	80.0	77.8
TraesCS6B01G039300.2	Wheat	plastid	76.0	76.25
TraesCS6A01G028100.1	Wheat	plastid	75.83	76.09
Zm00001d016540_P001	Maize	cytosol	13.17	75.96
TraesCS6D01G031400.1	Wheat	plastid	75.5	75.75
HORVU6Hr1G005220.3	Barley	plastid	75.17	75.42
GSMUA_Achr11P...	Banana	plastid	85.17	73.42
Zm00001d053279_P001	Maize	mitochondrion	19.0	72.61
Zm00001d046709_P001	Maize	mitochondrion	18.67	71.34
HORVU6Hr1G000180.2	Barley	plastid	76.0	70.05
HORVU4Hr1G066820.2	Barley	cytosol	27.17	69.36
CDY10557	Canola	endoplasmic reticulum, plastid	95.67	69.24
CDY56074	Canola	plastid	53.5	67.58
Zm00001d037526_P001	Maize	plastid	19.33	65.54
AT1G26230.1	Thale cress	plastid	61.83	60.72
AT2G28000.1	Thale cress	plastid	46.83	47.95
AT3G23990.1	Thale cress	mitochondrion	43.83	45.58
AT2G33210.1	Thale cress	mitochondrion	43.33	44.44
AT5G18820.1	Thale cress	plastid	42.5	44.35
AT3G13860.1	Thale cress	mitochondrion	41.83	43.88
Os02t0103100-01	Rice	plasma membrane, vacuole	0.33	1.37

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
EntrezGene:841996	UniProt:A0A178W724	ProteinID:AAD10647.1	ProteinID:AEE33251.1	ProteinID:AEE33252.1	EMBL:AF386945
EMBL:AK316889	EMBL:AK317612	ProteinID:ANM58183.1	ProteinID:ANM58184.1	ProteinID:ANM58185.1	ArrayExpress:AT1G55490
EnsemblPlantsGene:AT1G55490	RefSeq:AT1G55490	TAIR:AT1G55490	RefSeq:AT1G55490-TAIR-G	EnsemblPlants:AT1G55490.3	EMBL:AY081501
Unigene:At.19230	Symbol:CPN60B	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829
GO:GO:0005840	GO:GO:0005886	GO:GO:0006457	GO:GO:0006950	GO:GO:0007005	GO:GO:0008150
GO:GO:0008219	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009605
GO:GO:0009607	GO:GO:0009627	GO:GO:0009628	GO:GO:0009941	GO:GO:0009987	GO:GO:0010319
GO:GO:0016020	GO:GO:0016043	GO:GO:0019904	GO:GO:0022626	GO:GO:0042026	GO:GO:0044183
GO:GO:0048046	GO:GO:0051082	GO:GO:0051085	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	EMBL:M35598	HAMAP:MF_00600	RefSeq:NP_001320637.1	RefSeq:NP_001320638.1
RefSeq:NP_001320639.1	RefSeq:NP_175945.1	RefSeq:NP_849811.1	ProteinID:OAP14290.1	UniProt:P21240	PFAM:PF00118
PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF164	SUPFAM:SSF48592	SUPFAM:SSF52029
SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI00001352FC	SEG:seg	:

Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]

Coordinates

chr1:-:20715563..20719261

Molecular Weight (calculated)

63812.8 Da

IEP (calculated)

6.382

GRAVY (calculated)

-0.112

Length

600 amino acids

Sequence
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.