Factsheet for Zm00001d037526_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016540_P001	Maize	cytosol	57.06	97.12
Zm00001d053279_P001	Maize	mitochondrion	83.05	93.63
Zm00001d046709_P001	Maize	mitochondrion	81.92	92.36
Zm00001d017567_P001	Maize	cytosol	62.15	66.67
CDX72433	Canola	endoplasmic reticulum	59.32	33.23
EER89076	Sorghum	plastid	76.27	23.32
Zm00001d035937_P001	Maize	plastid	75.71	23.14
Zm00001d045544_P002	Maize	plastid	75.71	22.33
Os06t0114000-02	Rice	plastid	75.71	22.3
HORVU7Hr1G006490.2	Barley	cytosol	69.49	22.2
TraesCS4A01G452700.2	Wheat	plastid	71.75	21.75
CDX75715	Canola	cytosol	67.8	21.31
CDY23605	Canola	cytosol	51.98	21.2
TraesCS7A01G036200.2	Wheat	golgi	71.75	20.48
Bra001507.1-P	Field mustard	plastid	67.8	20.34
CDX82537	Canola	plastid	67.23	20.27
GSMUA_Achr9P23240_001	Banana	plastid	70.06	20.26
GSMUA_Achr3P27620_001	Banana	plastid	70.06	20.26
TraesCS7D01G032800.1	Wheat	cytosol	71.75	20.19
Zm00001d051252_P001	Maize	cytosol	23.16	20.0
CDX75713	Canola	plastid	66.67	19.9
KRH43861	Soybean	plastid	66.1	19.76
VIT_06s0004g00240.t01	Wine grape	plastid	67.8	19.74
KRH13605	Soybean	nucleus	65.54	19.63
CDY08245	Canola	plastid	66.1	19.5
AT3G13470.1	Thale cress	plastid	65.54	19.46
Bra011919.1-P	Field mustard	plastid	66.67	19.41
PGSC0003DMT400061700	Potato	extracellular	65.54	19.37
Solyc01g028810.2.1	Tomato	plastid	65.54	19.37
AT1G55490.3	Thale cress	plastid	65.54	19.33
VIT_09s0002g03930.t01	Wine grape	plastid	65.54	19.05
Zm00001d054089_P002	Maize	plastid	66.1	18.96
CDY32855	Canola	plastid	63.28	18.86
Bra028922.1-P	Field mustard	plastid	62.71	18.78
CDY11918	Canola	plastid	62.71	18.66
CDY26100	Canola	plastid	66.1	18.63
AT5G56500.2	Thale cress	plastid	62.71	18.59
PGSC0003DMT400006501	Potato	plastid	63.28	18.51
Solyc03g120850.2.1	Tomato	plastid	63.28	18.51
CDY36809	Canola	plastid	62.71	18.29
CDY43988	Canola	cytosol	50.85	17.51
CDX86994	Canola	mitochondrion, plastid	68.93	17.38
Bra027431.1-P	Field mustard	cytosol	50.85	17.34
Bra030858.1-P	Field mustard	cytosol	66.67	17.13
CDY02438	Canola	cytosol	66.67	16.93
CDY10557	Canola	endoplasmic reticulum, plastid	67.23	14.35
Zm00001d028409_P001	Maize	plastid	46.33	13.95
Zm00001d000399_P001	Maize	plastid	38.98	11.82
Zm00001d034919_P001	Maize	plastid	37.29	11.3
Zm00001d013912_P001	Maize	mitochondrion	7.91	10.94
Zm00001d014090_P002	Maize	mitochondrion	32.2	9.88
Zm00001d032789_P001	Maize	plastid	31.64	9.72
Zm00001d038857_P001	Maize	mitochondrion	31.64	9.66
CDY56074	Canola	plastid	20.34	7.58
CDX85007	Canola	cytosol, plastid	40.11	7.07
Zm00001d031503_P001	Maize	endoplasmic reticulum	3.95	5.65
Zm00001d005373_P001	Maize	plastid	31.64	4.66
CDY40825	Canola	endoplasmic reticulum, vacuole	5.08	4.23
CDY10302	Canola	extracellular	1.13	3.08
CDY32775	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.260.10	Gene3D:3.50.7.10	MapMan:35.1	UniProt:A0A1D6LYJ7	ProteinID:AQK84205.1	InterPro:Chaprnin_Cpn60
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	PRINTS:PR00298	PANTHER:PTHR11353	PANTHER:PTHR11353:SF8
SUPFAM:SSF52029	InterPro:TCP-1-like_intermed_sf	UniParc:UPI000844349A	EnsemblPlantsGene:Zm00001d037526	EnsemblPlants:Zm00001d037526_P001	EnsemblPlants:Zm00001d037526_T001
SEG:seg	:	:	:	:	:

Description

Chaperonin 60 subunit beta 2 chloroplastic

Coordinates

chr6:+:128130656..128131701

Molecular Weight (calculated)

19044.9 Da

IEP (calculated)

8.482

GRAVY (calculated)

-0.169

Length

177 amino acids

Sequence
(BLAST)

001: MSHCLLSELS LFGQAGTRQR DGRWSSLSRA VLRTLRPVGG SSALSARGSL KIAAIKAPGF GERKTQYLDD IAILTGATVI RDEVGLSLDK ADKSVLGTAA
101: KVVLTKESTT IVGDGSTQEE VTKRVAQIKN LIEAAEQEYE KEKLNERIVK LAGGVAVIQV GAQTETELKE ITHHLFE

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.