CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32775	Canola	cytosol	6.27	74.12
HORVU5Hr1G074160.1	Barley	cytosol	14.34	73.85
HORVU4Hr1G076680.1	Barley	cytosol	14.54	73.74
HORVU2Hr1G107410.2	Barley	cytosol	14.34	72.0
HORVU4Hr1G066820.2	Barley	cytosol	13.25	56.6
TraesCS6B01G012000.1	Wheat	cytosol	21.91	53.53
CDY10302	Canola	extracellular	3.39	52.31
Zm00001d016540_P001	Maize	cytosol	5.28	50.96
CDX72433	Canola	endoplasmic reticulum	16.04	50.95
HORVU7Hr1G006490.2	Barley	cytosol	25.8	46.75
CDX75715	Canola	cytosol	26.2	46.71
CDX75713	Canola	plastid	27.59	46.71
CDY08245	Canola	plastid	27.79	46.5
Zm00001d053279_P001	Maize	mitochondrion	7.27	46.5
CDX82537	Canola	plastid	27.09	46.34
PGSC0003DMT400061700	Potato	extracellular	27.49	46.08
Solyc01g028810.2.1	Tomato	plastid	27.49	46.08
VIT_06s0004g00240.t01	Wine grape	plastid	27.79	45.89
Zm00001d046709_P001	Maize	mitochondrion	7.17	45.86
CDY32855	Canola	plastid	26.79	45.29
CDY11918	Canola	plastid	26.79	45.21
GSMUA_Achr9P23240_001	Banana	plastid	27.49	45.1
CDY26100	Canola	plastid	28.09	44.9
GSMUA_Achr3P27620_001	Banana	plastid	27.19	44.61
CDY36809	Canola	plastid	26.79	44.32
Os06t0114000-02	Rice	plastid	26.39	44.09
CDX79518	Canola	cytosol	8.86	44.06
Zm00001d035937_P001	Maize	plastid	25.4	44.04
TraesCS4A01G452700.2	Wheat	plastid	25.6	44.01
EER89076	Sorghum	plastid	25.3	43.87
TraesCS6B01G011800.1	Wheat	plastid	25.3	42.83
TraesCS6A01G006400.1	Wheat	golgi	25.5	42.81
TraesCS6D01G009100.1	Wheat	golgi	25.5	42.81
TraesCS7A01G036200.2	Wheat	golgi	26.39	42.74
Zm00001d045544_P002	Maize	plastid	25.5	42.67
Os02t0102900-01	Rice	plastid	25.4	42.64
KXG29249	Sorghum	plastid	25.6	42.55
TraesCS6B01G012100.3	Wheat	plastid	25.3	42.33
TraesCS7D01G032800.1	Wheat	cytosol	26.39	42.13
TraesCS6A01G028100.1	Wheat	plastid	24.3	40.8
TraesCS6B01G039300.2	Wheat	plastid	24.3	40.8
Zm00001d054089_P002	Maize	plastid	25.0	40.68
TraesCS6D01G031400.1	Wheat	plastid	24.2	40.64
CDY02438	Canola	cytosol	28.19	40.6
HORVU6Hr1G005220.3	Barley	plastid	24.1	40.47
Zm00001d037526_P001	Maize	plastid	7.07	40.11
CDY23605	Canola	cytosol	17.13	39.63
GSMUA_Achr11P...	Banana	plastid	26.59	38.36
CDY43988	Canola	cytosol	18.53	36.19
CDY68896	Canola	cytosol	11.95	35.61
CDY20555	Canola	plastid	21.31	35.26
CDY66193	Canola	plastid	21.12	34.93
HORVU6Hr1G000180.2	Barley	plastid	22.61	34.87
CDY10557	Canola	endoplasmic reticulum, plastid	28.29	34.26
CDY59050	Canola	cytosol	11.06	32.84
CDX86994	Canola	mitochondrion, plastid	22.41	32.05
CDY56074	Canola	plastid	15.04	31.79
CDY30514	Canola	plastid	16.04	27.52
CDX83280	Canola	plastid	15.94	27.49
CDY31190	Canola	plastid	15.94	27.3
CDY04527	Canola	plastid	15.94	26.85
CDX93002	Canola	mitochondrion	14.24	26.0
CDX84697	Canola	mitochondrion	14.44	25.75
CDX77147	Canola	plastid	15.84	25.56
CDY17152	Canola	mitochondrion	14.54	25.44
CDY47184	Canola	plastid	14.64	25.43
CDX94835	Canola	mitochondrion	14.54	25.3
CDY02601	Canola	plastid	14.54	25.26
CDY19471	Canola	mitochondrion	14.74	24.96
CDX82514	Canola	mitochondrion	14.04	24.65
CDX71396	Canola	plastid	12.85	24.39
CDX75733	Canola	mitochondrion	13.84	24.3
CDY66712	Canola	mitochondrion	12.55	20.9
CDY40825	Canola	endoplasmic reticulum, vacuole	4.28	20.19
CDY56079	Canola	plastid	2.69	20.15
CDY37741	Canola	mitochondrion	12.15	19.97
CDY72107	Canola	mitochondrion	4.78	15.64
CDY31193	Canola	plastid	3.29	13.92
CDY59049	Canola	mitochondrion	2.79	12.84
Os02t0103100-01	Rice	plasma membrane, vacuole	0.2	1.37

Protein Annotations

Gene3D:1.10.560.10	MapMan:13.3.6.5.1.3	Gene3D:3.30.260.10	Gene3D:3.50.7.10	Gene3D:3.90.70.10	GO:A0A078D765
EnsemblPlants:CDX85007	ProteinID:CDX85007	ProteinID:CDX85007.1	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00142429001	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PANTHER:PTHR11353	PANTHER:PTHR11353:SF164
InterPro:Papain_like_cys_pep_sf	SUPFAM:SSF48592	SUPFAM:SSF54001	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	UniParc:UPI0004EEEC43
SEG:seg	:	:	:	:	:

Description

BnaC05g20480D

Coordinates

chrLK031839:+:1400062..1405603

Molecular Weight (calculated)

112586.0 Da

IEP (calculated)

5.081

GRAVY (calculated)

-0.550

Length

1004 amino acids

Sequence
(BLAST)

0001: MAGSDSKNRF FSSRQPPHDS VSSGNFPNLK FTAEKLVKEL ASMKSDLHLA HSKLKRSMDQ ILALKEKLQN AKLMGMQKED EKLRRGMESK FPSTNTLCDQ
0101: LTETLQHLAS QIQQAEKDKE RFEFKFSTSA QAINSLKQQM KDLSVKLSAS EENIKSREKE LEELQLEKGQ KENSYQNEQC RTASFSNEKD AMINNSDAAI
0201: AEAKLNIENL NFQIEKVRLE LTSKEDEGKY LVGVKEKLEQ ENMNIQLSAD NLSEYIEAMI RHCRDIIKDD KVTETIARDD DDVHIYSSGE GDTSGDDDYD
0301: DDDEEERDVN SKKGIDDQCE ERAWKRSAHL RSVSSSSVGA KEDATDTDPE GYRGFVPCPE RSDILEILAA RPDNLANYTA LPSTLPSRIS LYYAEMCLSE
0401: ERFELLKKSE PQGQIGVSDT SGRLYLFWTP RPLDRKHVFK KRQVERREVV AGYIRDQLFH ALCWAYSLCD MVSASLVLHG WEKEFIPLCP RYLCEKVRPD
0501: LYGKDLKRGA DLSSSAAHSC YGLSLEDGLA YVQDAGIPKE QNPTFNCNFK RASDPEEDLY RITDVFKYET MEQALVRLKS HPVAAKLTLF EGWSSDRIYR
0601: GPSKKGAGYI GEHEVLMLDC VLMDGEMVVR CKSSNGERIG VLGYIFVSLE VMFLLAGKDD SRFCFKEPQY LINGFFSIGM DTGPLGLQFT EKPNRKKRNL
0701: KKFKVVLEQI TTDSESSELG MMRTEHGSMI AEAMSRVGRK ETSTIVGDGT TQEAVQKHLT QIKNLIEQAE QDYEKEKLSE RIATLSGGVA VIQVGAQTET
0801: ELKDKNLIEQ VEQDYEKEKL NARIAKLSGR VAVIQVGEQT EPELKEKKLR VEYALNAKKA AVEDGIVVGG GCTLLRLASK VDTIKAALDD DEEKVGTDIV
0901: KRALSYPLNP VAKNAGVSGS IVSEKVLSNE NVKFGYNAAT GKYEDLMAAG IIDPTKVVRC CLEHAASVAK TFLMSDCVVV EIKEPEPVPT GNPMDNSGLV
1001: QTIY

Best Arabidopsis Sequence Match ( AT1G55490.1 )
(BLAST)

001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY

Arabidopsis Description

CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.