Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79518 | Canola | cytosol | 15.67 | 10.4 |
| CDY59050 | Canola | cytosol | 25.37 | 10.06 |
| CDY68896 | Canola | cytosol | 20.9 | 8.31 |
| CDX72433 | Canola | endoplasmic reticulum | 17.91 | 7.59 |
| CDY32775 | Canola | cytosol | 4.48 | 7.06 |
| CDX93002 | Canola | mitochondrion | 26.12 | 6.36 |
| CDX94835 | Canola | mitochondrion | 26.12 | 6.07 |
| CDY19471 | Canola | mitochondrion | 26.12 | 5.9 |
| CDY17152 | Canola | mitochondrion | 24.63 | 5.75 |
| CDY11918 | Canola | plastid | 23.13 | 5.21 |
| CDX84697 | Canola | mitochondrion | 21.64 | 5.15 |
| CDX75715 | Canola | cytosol | 21.64 | 5.15 |
| CDX82514 | Canola | mitochondrion | 21.64 | 5.07 |
| CDX75733 | Canola | mitochondrion | 21.64 | 5.07 |
| CDY36809 | Canola | plastid | 22.39 | 4.94 |
| CDX75713 | Canola | plastid | 21.64 | 4.89 |
| CDY32855 | Canola | plastid | 21.64 | 4.88 |
| CDX83280 | Canola | plastid | 20.9 | 4.81 |
| CDX82537 | Canola | plastid | 20.9 | 4.77 |
| CDY04527 | Canola | plastid | 20.9 | 4.7 |
| CDY08245 | Canola | plastid | 20.9 | 4.67 |
| CDX77147 | Canola | plastid | 21.64 | 4.66 |
| CDY30514 | Canola | plastid | 20.15 | 4.62 |
| CDY31190 | Canola | plastid | 20.15 | 4.61 |
| CDY43988 | Canola | cytosol | 17.16 | 4.47 |
| CDY26100 | Canola | plastid | 20.9 | 4.46 |
| CDY23605 | Canola | cytosol | 14.18 | 4.38 |
| CDY02601 | Canola | plastid | 17.91 | 4.15 |
| CDY47184 | Canola | plastid | 17.91 | 4.15 |
| CDY37741 | Canola | mitochondrion | 18.66 | 4.09 |
| CDY02438 | Canola | cytosol | 20.9 | 4.02 |
| CDX86994 | Canola | mitochondrion, plastid | 20.9 | 3.99 |
| CDY66712 | Canola | mitochondrion | 17.91 | 3.98 |
| CDX71396 | Canola | plastid | 15.67 | 3.97 |
| CDY66193 | Canola | plastid | 17.91 | 3.95 |
| CDY20555 | Canola | plastid | 17.16 | 3.79 |
| CDY10557 | Canola | endoplasmic reticulum, plastid | 20.9 | 3.38 |
| CDY10302 | Canola | extracellular | 1.49 | 3.08 |
| CDX85007 | Canola | cytosol, plastid | 20.15 | 2.69 |
| CDY56074 | Canola | plastid | 8.96 | 2.53 |
| CDY59049 | Canola | mitochondrion | 3.73 | 2.29 |
| CDY72107 | Canola | mitochondrion | 3.73 | 1.63 |
| CDY40825 | Canola | endoplasmic reticulum, vacuole | 2.24 | 1.41 |
| CDY31193 | Canola | plastid | 0.75 | 0.42 |
Protein Annotations
| Gene3D:1.10.560.10 | MapMan:35.1 | GO:A0A078IZK0 | UniProt:A0A078IZK0 | EnsemblPlants:CDY56079 | ProteinID:CDY56079 |
| ProteinID:CDY56079.1 | InterPro:Chaperone_TCP-1 | InterPro:Cpn60/TCP-1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:GROEL-like_equatorial_sf | EnsemblPlantsGene:GSBRNA2T00017793001 |
| InterPro:IPR027413 | PFAM:PF00118 | PRINTS:PR00304 | PANTHER:PTHR11353 | PANTHER:PTHR11353:SF8 | SUPFAM:SSF48592 |
| TMHMM:TMhelix | UniParc:UPI0004EDF313 | SEG:seg | : | : | : |
Description
BnaC06g41690DBnaC06g41690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZK0]
Coordinates
chrLK033455:-:21731..22326
Molecular Weight (calculated)
14843.1 Da
IEP (calculated)
10.982
GRAVY (calculated)
-0.249
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MWFHGPKYDK KLMNKLSSRS SGRRQNVCPR LRRSSPAIVC AAKELYFNTD GTTIRKLQAG VNKLADLVGV TLGSKGRNVV LESNKYGSPR IVNDGVTVAR
101: EESSNQQRSV SWHILLLKPA FLSALIISLS LLTD
101: EESSNQQRSV SWHILLLKPA FLSALIISLS LLTD
001: MASTFTATSS IGSMVAPNGH KSDKKLISKL SSSSFGRRQS VCPRPRRSSS AIVCAAKELH FNKDGTTIRR LQAGVNKLAD LVGVTLGPKG RNVVLESKYG
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY
101: SPRIVNDGVT VAREVELEDP VENIGAKLVR QAAAKTNDLA GDGTTTSVVL AQGFIAEGVK VVAAGANPVL ITRGIEKTAK ALVTELKKMS KEVEDSELAD
201: VAAVSAGNND EIGNMIAEAM SKVGRKGVVT LEEGKSAENN LYVVEGMQFD RGYISPYFVT DSEKMSVEFD NCKLLLVDKK ITNARDLVGV LEDAIRGGYP
301: ILIIAEDIEQ EALATLVVNK LRGTLKIAAL RAPGFGERKS QYLDDIAILT GATVIREEVG LSLDKAGKEV LGNASKVVLT KETSTIVGDG STQDAVKKRV
401: TQIKNLIEQA EQDYEKEKLN ERIAKLSGGV AVIQVGAQTE TELKEKKLRV EDALNATKAA VEEGIVVGGG CTLLRLASKV DAIKATLDND EEKVGADIVK
501: RALSYPLKLI AKNAGVNGSV VSEKVLSNDN VKFGYNAATG KYEDLMAAGI IDPTKVVRCC LEHAASVAKT FLMSDCVVVE IKEPEPVPVG NPMDNSGYGY
Arabidopsis Description
CPN60B1LEN1 [Source:UniProtKB/TrEMBL;Acc:A0A178W724]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.