CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93002	Canola	mitochondrion	94.97	99.64
AT3G23990.1	Thale cress	mitochondrion	95.84	95.84
CDY59050	Canola	cytosol	54.07	92.31
VIT_05s0051g00340.t01	Wine grape	mitochondrion	89.43	89.74
KRH33513	Soybean	mitochondrion	88.56	88.87
KRG90277	Soybean	mitochondrion	88.39	88.7
KRG92192	Soybean	mitochondrion	87.87	88.17
KRH34594	Soybean	mitochondrion	88.04	88.04
Os10t0462900-01	Rice	mitochondrion	87.0	87.46
GSMUA_Achr10P...	Banana	mitochondrion	87.0	87.3
Zm00001d014090_P002	Maize	mitochondrion	86.31	86.31
EER94121	Sorghum	mitochondrion	86.31	86.31
CDY72107	Canola	mitochondrion	45.75	85.99
GSMUA_Achr1P11160_001	Banana	mitochondrion	86.14	85.99
Zm00001d032789_P001	Maize	plastid	85.79	85.94
TraesCS1A01G145000.1	Wheat	mitochondrion	85.44	85.89
TraesCS1B01G162300.1	Wheat	mitochondrion	85.27	85.71
TraesCS1D01G144000.1	Wheat	mitochondrion	85.27	85.71
CDX84697	Canola	mitochondrion	83.02	85.08
Os03t0143400-01	Rice	mitochondrion	84.92	84.92
TraesCS4A01G409100.1	Wheat	mitochondrion	84.4	84.55
TraesCS4B01G307700.1	Wheat	mitochondrion	84.23	84.38
CDY17152	Canola	mitochondrion	83.19	83.62
CDY19471	Canola	mitochondrion	85.62	83.31
CDX79518	Canola	cytosol	29.12	83.17
KXG40202	Sorghum	cytosol	58.41	82.8
CDY59049	Canola	mitochondrion	30.33	80.28
HORVU4Hr1G078820.3	Barley	plastid	84.4	77.18
HORVU1Hr1G038680.8	Barley	mitochondrion	86.14	74.29
TraesCS4D01G305900.1	Wheat	golgi	84.23	73.86
CDX75733	Canola	mitochondrion	70.19	70.8
CDX82514	Canola	mitochondrion	70.19	70.8
CDY66712	Canola	mitochondrion	65.16	62.35
GSMUA_Achr10P...	Banana	cytosol	14.9	62.32
CDY37741	Canola	mitochondrion	64.82	61.21
TraesCS4B01G266200.1	Wheat	cytosol	40.03	55.66
CDY11918	Canola	plastid	46.79	45.38
CDX82537	Canola	plastid	45.58	44.8
CDY32855	Canola	plastid	46.1	44.78
CDX75713	Canola	plastid	45.23	44.01
CDY36809	Canola	plastid	46.27	43.99
CDY68896	Canola	cytosol	25.3	43.32
CDY08245	Canola	plastid	44.89	43.17
CDX75715	Canola	cytosol	42.11	43.16
CDX83280	Canola	plastid	42.29	41.92
CDY30514	Canola	plastid	42.29	41.71
CDY31190	Canola	plastid	42.11	41.47
CDY04527	Canola	plastid	42.81	41.44
CDY26100	Canola	plastid	45.06	41.4
CDY20555	Canola	plastid	42.29	40.2
CDY66193	Canola	plastid	42.11	40.03
CDY32775	Canola	cytosol	5.89	40.0
CDX71396	Canola	plastid	36.57	39.89
CDX77147	Canola	plastid	42.63	39.55
CDX72433	Canola	endoplasmic reticulum	20.8	37.97
CDY02438	Canola	cytosol	45.41	37.59
CDY23605	Canola	cytosol	28.08	37.33
CDY02601	Canola	plastid	37.26	37.2
CDY47184	Canola	plastid	36.92	36.85
CDY31193	Canola	plastid	14.9	36.29
CDY56074	Canola	plastid	28.6	34.74
HORVU4Hr1G071510.2	Barley	cytosol	42.29	34.27
CDY10557	Canola	endoplasmic reticulum, plastid	45.41	31.6
CDY43988	Canola	cytosol	27.56	30.93
CDY10302	Canola	extracellular	3.29	29.23
CDY40825	Canola	endoplasmic reticulum, vacuole	10.23	27.7
CDY56079	Canola	plastid	6.07	26.12
CDX86994	Canola	mitochondrion, plastid	30.85	25.36
CDX85007	Canola	cytosol, plastid	25.3	14.54

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	GO:A0A078DZR2	EnsemblPlants:CDX94835
ProteinID:CDX94835	ProteinID:CDX94835.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026	InterPro:GROEL-like_equatorial_sf
EnsemblPlantsGene:GSBRNA2T00158347001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0004EF44E4	SEG:seg

Description

BnaC03g43530D

Coordinates

chrLK031885:+:474652..478269

Molecular Weight (calculated)

61320.3 Da

IEP (calculated)

5.414

GRAVY (calculated)

-0.048

Length

577 amino acids

Sequence
(BLAST)

001: MFRFVSSLAS KARIASNTRQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EELADAVRVT MGPKGRTVVI EQSWGAPKVT KDGVTVAKSI EFKDKVKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF TEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSRARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLINELEVV EGMKLDRGYT SPYFITNQKT QKCELEEPLI LIHEKKISSI NSIVKVLELA MKRQRPLLIV SEDVESEALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLGMLGTC KRVTVSKDDT VILDGAGDKT AIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VHTIASNAGV EGAVIVGKLL
501: EQDNTDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESAGAGAGMG GMGGMDY

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.