Factsheet for TraesCS4B01G266200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40202	Sorghum	cytosol	52.29	53.32
CDX79518	Canola	cytosol	23.13	47.52
CDY59050	Canola	cytosol	37.59	46.15
HORVU4Hr1G071510.2	Barley	cytosol	73.49	42.84
Os03t0143400-01	Rice	mitochondrion	58.8	42.29
TraesCS4B01G307700.1	Wheat	mitochondrion	58.31	42.01
CDX93002	Canola	mitochondrion	55.66	42.0
TraesCS1B01G162300.1	Wheat	mitochondrion	56.87	41.12
AT3G23990.1	Thale cress	mitochondrion	55.9	40.21
Bra001934.1-P	Field mustard	mitochondrion	55.66	40.03
CDX94835	Canola	mitochondrion	55.66	40.03
KRH34594	Soybean	mitochondrion	55.66	40.03
VIT_05s0051g00340.t01	Wine grape	mitochondrion	55.18	39.83
KRG92192	Soybean	mitochondrion	55.18	39.83
GSMUA_Achr10P...	Banana	mitochondrion	54.94	39.65
PGSC0003DMT400069855	Potato	mitochondrion	54.7	39.62
KRG90277	Soybean	mitochondrion	54.7	39.48
Solyc05g053470.2.1	Tomato	plastid	54.46	39.44
PGSC0003DMT400030265	Potato	mitochondrion	54.46	39.3
KRH33513	Soybean	mitochondrion	54.46	39.3
GSMUA_Achr1P11160_001	Banana	mitochondrion	54.22	38.93
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	53.98	38.69
AT2G33210.1	Thale cress	mitochondrion	53.98	38.29
CDX84697	Canola	mitochondrion	51.57	38.01
Bra021836.1-P	Field mustard	cytosol	40.48	37.58
Bra022931.1-P	Field mustard	mitochondrion	49.64	36.98
CDY19471	Canola	mitochondrion	52.77	36.93
CDY17152	Canola	mitochondrion	50.84	36.76
Bra005514.1-P	Field mustard	mitochondrion	48.92	36.31
TraesCS1B01G378000.1	Wheat	mitochondrion	48.92	34.82
GSMUA_Achr10P...	Banana	cytosol	11.57	34.78
CDY66712	Canola	mitochondrion	48.67	33.5
CDY37741	Canola	mitochondrion	46.99	31.91
TraesCS6B01G012000.1	Wheat	cytosol	29.88	30.17
CDY72107	Canola	mitochondrion	21.2	28.66
CDY59049	Canola	mitochondrion	13.73	26.15
TraesCS2B01G328500.3	Wheat	plastid	31.81	22.3
TraesCS6B01G011800.1	Wheat	plastid	31.57	22.09
TraesCS5B01G368900.1	Wheat	plastid	30.84	21.69
TraesCS6B01G012100.3	Wheat	plastid	31.33	21.67
TraesCS6B01G039300.2	Wheat	plastid	31.08	21.57
TraesCS5B01G563900.2	Wheat	plastid	29.64	20.92

Protein Annotations

Gene3D:1.10.560.10	Gene3D:3.30.260.10	Gene3D:3.50.7.10	MapMan:35.1	InterPro:Chaperone_TCP-1	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf
InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304	PANTHER:PTHR11353
PANTHER:PTHR11353:SF85	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	EnsemblPlantsGene:TraesCS4B01G266200
EnsemblPlants:TraesCS4B01G266200.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:537818046..537824231

Molecular Weight (calculated)

45050.5 Da

IEP (calculated)

4.767

GRAVY (calculated)

-0.114

Length

415 amino acids

Sequence
(BLAST)

001: MASGVNGIDL RDGICMAVDD VMRNLKNMAR MINTFQEIAQ VGTISADGEK ELGELIANAI VMVDKEEIIT IVDGSTRCSE LQVVKCIKLE RGYFTQHFIT
101: NQKYKTCELD DPLIFIHDQM VSNVQAIKVL EFAITEGRPL LILAEDVDAK AIKTMVAEKY IKGMKVCAVK VPGHGENMEL NLLAIVTGGQ IFTEENGMNL
201: LPHTLGTCKK VIVSEDDCTI FGGAADDNTI ENRTKQLGSA TEKSTGLAEM YCRAAIMKIG GMDKLEIGEK KDRAIHALNA TKAAVEEGIV PGDGVALVYA
301: AKDLDKLDTA NVGQKSGVQI IQNVLKIPFH TNASSAGHDG DDILSKILEQ NNTGLAYDAA KGEYADMLEA GSIEPLKVIR TALMDVQRES CQMLTDTDGH
401: LSPKERTQNK QFAVP

Best Arabidopsis Sequence Match ( AT2G33210.1 )
(BLAST)

001: MYRLVSNVAS KARIARKCTS QIGSRLNSTR NYAAKDIRFG VEARALMLRG VEDLADAVKV TMGPKGRNVI IEQSWGAPKV TKDGVTVAKS IEFKDRIKNV
101: GASLVKQVAN ATNDVAGDGT TCATVLTRAI FTEGCKSVAA GMNAMDLRRG IKLAVDTVVT NLQSRARMIS TSEEIAQVGT ISANGDREIG ELIAKAMETV
201: GKEGVITIQD GKTLFNELEV VEGMKIDRGY ISPYFITNPK TQKCELEDPL ILIHEKKISN INAMVKVLEL ALKKQRPLLI VAEDVESDAL ATLILNKLRA
301: NIKVCAVKAP GFGENRKANL HDLAALTGAQ VITEELGMNL DNIDLSMFGN CKKVTVSKDD TVVLDGAGDK QAIGERCEQI RSMVEASTSD YDKEKLQERL
401: AKLSGGVAVL KIGGASETEV SEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYASKELEKL STANFDQKIG VQIIQNALKT PVYTIASNAG VEGAVVVGKL
501: LEQDNPDLGY DAAKGEYVDM IKAGIIDPLK VIRTALVDAA SVSSLLTTTE AVVTEIPTKE VASPGMGGGG MGGMGGMGGM GGMGF

Arabidopsis Description

HSP60-2Chaperonin CPN60-like 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7B5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.