CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

plasma membrane: 19658398
nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92192	Soybean	mitochondrion	98.27	98.61
KRH33513	Soybean	mitochondrion	92.89	93.22
KRG90277	Soybean	mitochondrion	92.89	93.22
VIT_05s0051g00340.t01	Wine grape	mitochondrion	90.99	91.3
GSMUA_Achr10P...	Banana	mitochondrion	89.43	89.74
GSMUA_Achr1P11160_001	Banana	mitochondrion	89.08	88.93
AT3G23990.1	Thale cress	mitochondrion	88.56	88.56
Solyc05g053470.2.1	Tomato	plastid	87.52	88.13
CDX94835	Canola	mitochondrion	88.04	88.04
Bra001934.1-P	Field mustard	mitochondrion	87.69	87.69
Zm00001d032789_P001	Maize	plastid	87.52	87.67
Os10t0462900-01	Rice	mitochondrion	87.17	87.63
PGSC0003DMT400069855	Potato	mitochondrion	87.0	87.61
EER94121	Sorghum	mitochondrion	87.52	87.52
Zm00001d014090_P002	Maize	mitochondrion	87.35	87.35
PGSC0003DMT400030265	Potato	mitochondrion	87.0	87.3
CDX93002	Canola	mitochondrion	83.19	87.27
TraesCS1B01G162300.1	Wheat	mitochondrion	86.48	86.93
TraesCS1A01G145000.1	Wheat	mitochondrion	86.48	86.93
TraesCS1D01G144000.1	Wheat	mitochondrion	86.31	86.76
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	86.66	86.36
Os03t0143400-01	Rice	mitochondrion	85.96	85.96
TraesCS4B01G307700.1	Wheat	mitochondrion	85.62	85.76
TraesCS4A01G409100.1	Wheat	mitochondrion	85.62	85.76
CDY59050	Canola	cytosol	48.35	82.54
KXG40202	Sorghum	cytosol	57.89	82.06
HORVU4Hr1G078820.3	Barley	plastid	85.27	77.97
CDY59049	Canola	mitochondrion	28.6	75.69
TraesCS4D01G305900.1	Wheat	golgi	85.62	75.08
HORVU1Hr1G038680.8	Barley	mitochondrion	86.31	74.44
KRH47114	Soybean	mitochondrion	70.19	70.56
KRH44140	Soybean	mitochondrion	69.67	70.03
GSMUA_Achr10P...	Banana	cytosol	14.9	62.32
TraesCS4B01G266200.1	Wheat	cytosol	40.03	55.66
KRH13605	Soybean	nucleus	45.23	44.16
KRH43861	Soybean	plastid	45.23	44.09
KRH25068	Soybean	nucleus	44.37	43.84
KRH30612	Soybean	endoplasmic reticulum	41.94	40.81
KRH71056	Soybean	plastid	40.73	38.84
KRH75202	Soybean	plastid	40.55	38.68
KRH50415	Soybean	plastid	37.78	37.14
KRG89369	Soybean	plastid	37.78	37.01
HORVU4Hr1G071510.2	Barley	cytosol	42.98	34.83
KRH01342	Soybean	cytosol	8.15	29.38

Protein Annotations

Gene3D:1.10.560.10	EntrezGene:100818544	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EMBL:ACUP02006610
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	InterPro:Cpn60/TCP-1	EnsemblPlantsGene:GLYMA_10G193200	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183	GO:GO:0045041
GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	UniProt:I1LCI1	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	EnsemblPlants:KRH34594	ProteinID:KRH34594	ProteinID:KRH34594.1	HAMAP:MF_00600
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000233D3A8	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:42545555..42550179

Molecular Weight (calculated)

61435.3 Da

IEP (calculated)

5.564

GRAVY (calculated)

-0.085

Length

577 amino acids

Sequence
(BLAST)

001: MYRFATSLAS KARIARSSTQ QIGSRVSWNR NYAAKDIKFG VEARALMLKG VEELADAVKV TMGPKGRNVV IEQSFGAPKV TKDGVTVAKS IEFKDKVKNI
101: GASLVKQVAN ATNDVAGDGT TCATILTKAI FTEGCKSVAA GMNAMDLRRG INMAVDTVVT NLKSRARMIS TSEEIAQVGT ISANGEREIG ELIAKAMEKV
201: GKEGVITISD GKTLYNELEV VEGMKLDRGY ISPYFITNQK NQKCELEDPL IIIHEKKISS INAIVKVLEL ALKRQRPLLI VAEDVESDAL ATLILNKLRA
301: GIKVCAIKAP GFGENRKSGL QDLAVLTGGQ LITEELGLNL EKVDLEVFGS CKKITISKDD TVILDGAGDK KAIEERSEQI RSAIENSTSD YDKEKLQERL
401: AKLSGGVAVL KIGGASEAEV GEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYASSELDKL QTANFDQKIG VQIIQNALKT PVHTIASNAG VEGAVVVGKL
501: LEQNDPDLGY DAAKGEYVDM VKAGIIDPLK VIRTALVDAA SVSSLMTTTE AIVSELPKDD KDVPAMGGMG GMGGMDY

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.