Factsheet for Solyc05g053470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069855	Potato	mitochondrion	98.78	98.78
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	89.53	88.6
VIT_05s0051g00340.t01	Wine grape	mitochondrion	88.83	88.52
KRH33513	Soybean	mitochondrion	88.13	87.83
KRG92192	Soybean	mitochondrion	88.13	87.83
KRH34594	Soybean	mitochondrion	88.13	87.52
KRG90277	Soybean	mitochondrion	87.78	87.48
GSMUA_Achr10P...	Banana	mitochondrion	87.78	87.48
Os10t0462900-01	Rice	mitochondrion	87.26	87.11
GSMUA_Achr1P11160_001	Banana	mitochondrion	87.09	86.33
EER94121	Sorghum	mitochondrion	86.91	86.31
Zm00001d032789_P001	Maize	plastid	86.39	85.94
Zm00001d014090_P002	Maize	mitochondrion	86.39	85.79
TraesCS1B01G162300.1	Wheat	mitochondrion	85.51	85.37
TraesCS1A01G145000.1	Wheat	mitochondrion	85.51	85.37
Os03t0143400-01	Rice	mitochondrion	85.86	85.27
TraesCS1D01G144000.1	Wheat	mitochondrion	85.34	85.19
TraesCS4A01G409100.1	Wheat	mitochondrion	84.82	84.38
CDY72107	Canola	mitochondrion	45.2	84.36
AT2G33210.1	Thale cress	mitochondrion	85.86	84.1
TraesCS4B01G307700.1	Wheat	mitochondrion	84.47	84.03
CDX84697	Canola	mitochondrion	82.02	83.48
Bra022931.1-P	Field mustard	mitochondrion	80.45	82.76
Bra005514.1-P	Field mustard	mitochondrion	80.45	82.47
KXG40202	Sorghum	cytosol	58.12	81.82
CDX79518	Canola	cytosol	28.8	81.68
CDY17152	Canola	mitochondrion	81.68	81.53
CDY19471	Canola	mitochondrion	84.12	81.28
HORVU4Hr1G078820.3	Barley	plastid	84.47	76.7
TraesCS4D01G305900.1	Wheat	golgi	84.64	73.71
HORVU1Hr1G038680.8	Barley	mitochondrion	85.69	73.39
Solyc03g121640.2.1	Tomato	plastid	71.73	71.73
Bra021836.1-P	Field mustard	cytosol	50.96	65.32
GSMUA_Achr10P...	Banana	cytosol	15.53	64.49
CDY66712	Canola	mitochondrion	64.4	61.19
CDY37741	Canola	mitochondrion	63.53	59.57
TraesCS4B01G266200.1	Wheat	cytosol	39.44	54.46
Solyc01g028810.2.1	Tomato	plastid	46.07	44.07
Solyc03g120850.2.1	Tomato	plastid	45.2	42.81
Solyc11g069790.1.1	Tomato	plastid	43.11	42.01
Solyc06g075010.2.1	Tomato	plastid	43.11	41.94
Solyc05g010240.2.1	Tomato	plastid	39.09	41.4
Solyc02g068730.2.1	Tomato	plastid	37.35	36.71
HORVU4Hr1G071510.2	Barley	cytosol	42.41	34.13

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829
GO:GO:0006457	GO:GO:0006458	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0042026	GO:GO:0044183	GO:GO:0045041	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:K4C227	HAMAP:MF_00600
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	EnsemblPlantsGene:Solyc05g053470.2	EnsemblPlants:Solyc05g053470.2.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI000276630D	:	:	:	:	:

Description

Chaperonin CPN60, mitochondrial [Source:Projected from Arabidopsis thaliana (AT3G23990) UniProtKB/Swiss-Prot;Acc:P29197]

Coordinates

chr5:+:63559772..63565824

Molecular Weight (calculated)

61130.0 Da

IEP (calculated)

5.578

GRAVY (calculated)

-0.076

Length

573 amino acids

Sequence
(BLAST)

001: MYRFAAKLAS KSRVARSSTQ QVGSRLNWSR NYAAKDIKFG VEARGIMLQG VEQLADAVKV TMGPKGRNVV IEQSWGAPKV TKDGVTVAKS IEFKDKIKNV
101: GASLVKQVAN ATNDAAGDGT TCATVLTRAI FAEGCKSVAA GMNAMDLRRG ITMAVDAVVT NLKSRARMIS TSEEIAQVGT ISANGEREIG EIIARAMEQV
201: GKEGVITIQD GKTLLNDLQV VEGMKLDRGY ISPYFITNEK NQKCELDDPL ILIHEKKISS INAIVKVLEL ALKRQRPLLI VSEDVESEAL ATLILNKLRA
301: GIKVCAIKAP GFGENRKANL QDLAALTGGQ VITEELGMNI ENVELEMLGK CKKVTISKDD TVVLDGAGEK KAIEERCEQI RSAIELSTSD YDKEKLQERL
401: ARLSGGVAVL KVGGASEVEV GEKKDRVTDA LNATKAAVEE GILPGGGVAL LYASKELDSL PTANFDQKIG VQIIQNALKT PVYTIASNAG VEGSVVVGKL
501: LEQDNPDLGY DAAKGEYVDM VKAGIIDPLK VIRTALVDAA SVSSLLTTTE AVIVELPKDE KAAPAMPGGG MDY

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.