Factsheet for Solyc05g010240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064673	Potato	cytosol	70.61	84.7
VIT_01s0010g00920.t01	Wine grape	mitochondrion	76.71	68.03
KRH75202	Soybean	plastid	74.86	66.94
KRH71056	Soybean	plastid	74.49	66.61
CDY20555	Canola	plastid	72.27	64.42
GSMUA_Achr9P18480_001	Banana	plastid	70.06	64.13
Bra012462.1-P	Field mustard	plastid	71.9	64.09
CDY66193	Canola	plastid	71.72	63.92
AT1G26230.1	Thale cress	plastid	71.35	63.18
TraesCS2D01G310000.3	Wheat	plastid	66.73	61.6
TraesCS2B01G328500.3	Wheat	plastid	66.54	60.81
Os04t0443900-01	Rice	plastid	65.99	60.71
Zm00001d028409_P001	Maize	plastid	65.25	60.03
HORVU2Hr1G077410.18	Barley	plastid	65.8	59.93
Solyc01g028810.2.1	Tomato	plastid	64.33	58.1
Solyc03g120850.2.1	Tomato	plastid	63.4	56.69
TraesCS2A01G311700.1	Wheat	plastid	65.99	55.09
Solyc11g069790.1.1	Tomato	plastid	44.55	40.99
Solyc06g075010.2.1	Tomato	plastid	43.25	39.73
Solyc05g053470.2.1	Tomato	plastid	41.4	39.09
Solyc02g068730.2.1	Tomato	plastid	41.4	38.42
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	40.11	37.48
Solyc03g121640.2.1	Tomato	plastid	39.37	37.17

Protein Annotations

MapMan:1.1.8.1.6.2.2	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.2	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0042026	GO:GO:0044183	GO:GO:0051082	GO:GO:0061077
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:K4BXJ7
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF81	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	EnsemblPlantsGene:Solyc05g010240.2	EnsemblPlants:Solyc05g010240.2.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI0002767008	SEG:seg	:	:	:	:

Description

Chaperonin 60 subunit beta 4, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G26230) UniProtKB/Swiss-Prot;Acc:Q9C667]

Coordinates

chr5:+:4417123..4420793

Molecular Weight (calculated)

58635.1 Da

IEP (calculated)

8.843

GRAVY (calculated)

-0.141

Length

541 amino acids

Sequence
(BLAST)

001: MSCSLNHLPA ITLKNGSVNR ISKRVSCSML NTRAMAKELY FNHDGSTTKK LLAGVDLVAE LVGVTLGPKG RNVVLGNKYG PPKIVNDGET VLKEIQLDDP
101: LEYVGVKLVR EAGAKTNNLA GDGCTTSIVL ARGLIAEGVK VTAMGANVVQ VSRGIEKTAK ALISELKLMS REVEDHELED VAAVSAGNDY AIGNMISEAL
201: RQVGREGVVT IEKGNSTKTN LEVVEGMQFD RGYLSPYFVT DRRKRIAELH DCKLLLVDKK ISNPKELVKI LDNAVKEKYP VLIIAEGIEQ DALAPVIRNK
301: LRGVLKVAAI KAPSFGERKS HYLDDIAILT GGTVIRDDIG LTLENAHKDL LGSASKVVIT KDSTLIVTDG NTQTAVSKRV SQIQNLVENT EEKFQKKILN
401: ERIARLSGGI AVIQVGAQTQ VELKDKQLRI EDALNAARAA SEEGVVVGGG CCLLRLSSKV DAIKETLDNE DQKIGADIFK RALSYPAKQI AKNAGVNGSI
501: VVEKILSVDD MKYGYNAARD RYEDLMAAKI LDPTKARYYI S

Best Arabidopsis Sequence Match ( AT1G26230.1 )
(BLAST)

001: MAFSQAALSA LPLSDRTFRK KPSSSSSSSP NFVLRVRAAA KEVHFNRDGS VTKKLQAGAD MVAKLLGVTL GPKGRNVVLQ NKYGPPRIVN DGETVLKEIE
101: LEDPLENVGV KLVRQAGAKT NDLAGDGSTT SIILAHGLIT EGIKVISAGT NPIQVARGIE KTTKALVLEL KSMSREIEDH ELAHVAAVSA GNDYEVGNMI
201: SNAFQQVGRT GVVTIEKGKY LVNNLEIVEG MQFNRGYLSP YFVTDRRKRE AEFHDCKLLL VDKKITNPKD MFKILDSAVK EEFPVLIVAE DIEQDALAPV
301: IRNKLKGNLK VAAIKAPAFG ERKSHCLDDL AIFTGATVIR DEMGLSLEKA GKEVLGTAKR VLVTKDSTLI VTNGFTQKAV DERVSQIKNL IENTEENFQK
401: KILNERVARL SGGIAIIQVG ALTQVELKDK QLKVEDALNA TKSAIEEGIV VGGGCALLRL ATKVDRIKET LDNTEQKIGA EIFKKALSYP IRLIAKNADT
501: NGNIVIEKVL SNKNTMYGYN AAKNQYEDLM LAGIIDPTKV VRCCLEHASS VAQTFLTSDC VVVEIKEIKP RPIINPPLPT SSPATSSMFP DRKLPRFPQI
601: MPRTRSHFPR K

Arabidopsis Description

CPN60B4Cpn60beta4 [Source:UniProtKB/TrEMBL;Acc:A0A178WH16]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.