Factsheet for Solyc02g068730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027020	Potato	cytosol	86.11	93.66
VIT_01s0011g01680.t01	Wine grape	plastid	75.99	75.99
KRH50415	Soybean	plastid	70.33	69.85
KRG89369	Soybean	plastid	70.33	69.61
CDY47184	Canola	plastid	68.78	69.38
AT5G18820.1	Thale cress	plastid	68.1	69.04
Bra023694.1-P	Field mustard	plastid	68.44	69.03
CDY02601	Canola	plastid	68.1	68.69
Solyc11g069790.1.1	Tomato	plastid	61.23	60.71
TraesCS5A01G366800.1	Wheat	plastid	59.69	58.88
HORVU0Hr1G038830.17	Barley	plastid	59.52	58.81
Solyc06g075010.2.1	Tomato	plastid	59.35	58.74
Os09t0563300-02	Rice	plastid	58.83	58.73
EER96340	Sorghum	plastid	58.83	58.63
TraesCS5B01G368900.1	Wheat	plastid	59.18	58.47
TraesCS5D01G376000.1	Wheat	plastid	59.01	58.31
Solyc01g028810.2.1	Tomato	plastid	44.94	43.74
Solyc03g120850.2.1	Tomato	plastid	43.91	42.31
Solyc05g010240.2.1	Tomato	plastid	38.42	41.4
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	37.39	37.65
Solyc05g053470.2.1	Tomato	plastid	36.71	37.35
Solyc03g121640.2.1	Tomato	plastid	34.13	34.73
GSMUA_Achr10P...	Banana	cytosol	68.27	32.46
Zm00001d005373_P001	Maize	plastid	58.83	28.56

Protein Annotations

MapMan:1.1.8.1.6.2.1	Gene3D:1.10.560.10	MapMan:1.2.1.2.1.1	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0007005
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016043	GO:GO:0042026
GO:GO:0044183	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	UniProt:K4B7K5	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296
PANTHER:PTHR11353	PANTHER:PTHR11353:SF172	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	EnsemblPlantsGene:Solyc02g068730.2
EnsemblPlants:Solyc02g068730.2.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0002767CDD	:	:

Description

Chaperonin 60 subunit alpha 2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G18820) UniProtKB/Swiss-Prot;Acc:Q56XV8]

Coordinates

chr2:-:38665791..38670943

Molecular Weight (calculated)

62127.7 Da

IEP (calculated)

6.681

GRAVY (calculated)

0.008

Length

583 amino acids

Sequence
(BLAST)

001: MSLSMCSPLY SPLKLSFKED KGKGNSWGLR QSLGKKKLMV VRAGPKRIAF DKECRRALLS GINKLADAVS VTLGPRGRNV VLSEAGGLKI INDGVTIAQA
101: IELPDTIENA GATLIQEVAT KTNRLAGDGT TTAIVLAREM IKAGLLAVDF GANPVSMKKG MDQTVRELVN TLKKKSHPVR GNDDIKAVAS ISAGNDEFIG
201: SLIAEAINKI GPDGVICIES SSSAETSIMV EEGMKIDKGY MSPHFINNPE KSIVEFENAK VLVTDQKICS VKEIVPLLEK ATQLSVPLLI FAEDITNQVL
301: ETLVINKMQG MLNVAVVQCP GFRDGKKGVL QDIAMLTGAD FLSGDLGLTL ESATSDQLGI ARKITITSNS TTIVAHPSTK AEIQARIMQI KKDLAETDNK
401: SISEKLSQRI AKLSGGVAIL KVGAHTETEL EDRKLRIEDA KSATFAAMDE GIVPGGGATF IHLSEQIPLI KESFQDPDEQ IGADIIGTAL LAPAKLIAAN
501: AGVDGDTVVE KVRGCDWKMG YNAMTGRYED LLASGIIDPC RVSRCALQNA VSVAGIVLTT QAIMVEKTKE PKPLVPYVPG ITP

Best Arabidopsis Sequence Match ( AT5G18820.1 )
(BLAST)

001: MFAVSPSSFS PTTISPRRSG QRNEPRKFSV VRAGAKRILY GKDSREKLQA GIDKLADAVS ITLGPRGRNV VLAEKDTIKV INDGVTIAKS IELPDTIENA
101: GATLIQEVAI KMNESAGDGT TTAIILAREM IKAGSLAIAF GANAVSVKNG MNKTVKELVR VLQMKSIPVQ GKNDIKAVAS ISAGNDEFVG NLIAETVEKI
201: GPDGVISIES SSTSETSVIV EEGMKFDKGY MSPHFITNQE KSTVEFDKAK ILVTDQKITS AKELVPLLEK TSQLSVPLLI IAEDISAEVL EILVVNKKQG
301: LINVAVVKCP GMLDGKKALL QDIALMTGAD YLSGDLGMSL MGATSDQLGV SRRVVITANS TTIVADASTK PEIQARIAQM KKDLAETDNS YLSKKIAERI
401: AKLTGGVAVI KVGGHTETEL EDRKLRIEDA KNATFAAMRE GIVPGGGATY IHLLDEIPRI KKNLMEDSYE QIGADIVAMA LTAPAMAIAT NAGVDGSVVV
501: QKTRELEWRS GYNAMSGKYE DLLNAGIADP CRVSRFALQN AVSVAGIILT TQAVLVEKIK QPKPAVPQVP GIPTS

Arabidopsis Description

CPN60A2Chaperonin 60 subunit alpha 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q56XV8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.