Factsheet for Solyc09g091180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, unclear, extracellular, nucleus

Predictor Summary:

cytosol 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030265	Potato	mitochondrion	98.1	98.78
Solyc05g053470.2.1	Tomato	plastid	88.6	89.53
VIT_05s0051g00340.t01	Wine grape	mitochondrion	87.74	88.35
GSMUA_Achr10P...	Banana	mitochondrion	86.7	87.3
KRH33513	Soybean	mitochondrion	86.53	87.13
KRG90277	Soybean	mitochondrion	86.36	86.96
KRG92192	Soybean	mitochondrion	86.18	86.78
KRH34594	Soybean	mitochondrion	86.36	86.66
GSMUA_Achr1P11160_001	Banana	mitochondrion	85.49	85.64
Os10t0462900-01	Rice	mitochondrion	84.63	85.37
EER94121	Sorghum	mitochondrion	84.28	84.58
Zm00001d014090_P002	Maize	mitochondrion	83.94	84.23
TraesCS1D01G144000.1	Wheat	mitochondrion	83.42	84.15
TraesCS1A01G145000.1	Wheat	mitochondrion	83.42	84.15
TraesCS1B01G162300.1	Wheat	mitochondrion	83.42	84.15
CDY72107	Canola	mitochondrion	44.56	84.04
Zm00001d032789_P001	Maize	plastid	83.59	84.03
TraesCS4A01G409100.1	Wheat	mitochondrion	83.42	83.85
Os03t0143400-01	Rice	mitochondrion	83.42	83.71
TraesCS4B01G307700.1	Wheat	mitochondrion	83.25	83.68
CDX79518	Canola	cytosol	29.19	83.66
AT2G33210.1	Thale cress	mitochondrion	83.77	82.91
CDX84697	Canola	mitochondrion	80.48	82.77
Bra022931.1-P	Field mustard	mitochondrion	79.1	82.23
Bra005514.1-P	Field mustard	mitochondrion	79.1	81.93
CDY17152	Canola	mitochondrion	80.48	81.18
CDY19471	Canola	mitochondrion	82.73	80.78
KXG40202	Sorghum	cytosol	56.65	80.59
HORVU4Hr1G078820.3	Barley	plastid	83.42	76.55
TraesCS4D01G305900.1	Wheat	golgi	83.25	73.25
HORVU1Hr1G038680.8	Barley	mitochondrion	83.59	72.35
Solyc03g121640.2.1	Tomato	plastid	69.43	70.16
Bra021836.1-P	Field mustard	cytosol	48.88	63.31
GSMUA_Achr10P...	Banana	cytosol	14.51	60.87
CDY66712	Canola	mitochondrion	62.87	60.36
CDY37741	Canola	mitochondrion	62.0	58.76
TraesCS4B01G266200.1	Wheat	cytosol	38.69	53.98
Solyc01g028810.2.1	Tomato	plastid	45.42	43.91
Solyc03g120850.2.1	Tomato	plastid	45.25	43.31
Solyc11g069790.1.1	Tomato	plastid	43.52	42.86
Solyc06g075010.2.1	Tomato	plastid	42.49	41.77
Solyc05g010240.2.1	Tomato	plastid	37.48	40.11
Solyc02g068730.2.1	Tomato	plastid	37.65	37.39
HORVU4Hr1G071510.2	Barley	cytosol	42.14	34.27

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829
GO:GO:0006457	GO:GO:0006458	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0042026	GO:GO:0044183	GO:GO:0045041	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:K4CWE4	HAMAP:MF_00600
PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592
SUPFAM:SSF52029	SUPFAM:SSF54849	EnsemblPlantsGene:Solyc09g091180.2	EnsemblPlants:Solyc09g091180.2.1	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348
UniParc:UPI000276B390	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:70500487..70505814

Molecular Weight (calculated)

61563.5 Da

IEP (calculated)

5.272

GRAVY (calculated)

-0.049

Length

579 amino acids

Sequence
(BLAST)

001: MYRFAANLAS KASVARTSSQ KIGGRLNWSR NYAAKDIRFG VEARALMLQG VEQLADAVKV TMGPKGRNVV IEQSWGAPKV TKDGVTVAKS IEFKDKIQNV
101: GASLVKQVAN ATNDVAGDGT TCATVLTRAI FAEGCKSVAA GMNAMDLRRG ITMAVDSVVT NLKSRARMIS TSEEIAQVGT ISANGERVIG DLIARAMEKV
201: GKEGVITIQD GKTLLNELDV VEGMKLDRGY ISPYFITNQK NQKCELDNPL ILIHEKKISS INAVVKALEL ALKRQRPLLI VAEDVDNEAL ATLILNKLRA
301: GIKVCAIKAP GFGENRKAYL QDLAILTGGQ VITEELGLNI ENLEFEMLGT SKEATISKDD TVILDGAGEK KSIEERCELI RSTIEQSTSD YDKEKLQERL
401: AKLSGGVAVL KIGGASEAEV GEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYAARELDNL TTANFDQKIG VQIIQNALKT PVHTIASNAG VEGAVVVGKL
501: LDQDNLDLGY DAAKGEYVDM IKAGIIDPVK VIRTALVDAA SVSSLLTTTE AVVVELPKDE KESPAMGGGM GGGMGGMDF

Best Arabidopsis Sequence Match ( AT3G23990.1 )
(BLAST)

001: MYRFASNLAS KARIAQNARQ VSSRMSWSRN YAAKEIKFGV EARALMLKGV EDLADAVKVT MGPKGRNVVI EQSWGAPKVT KDGVTVAKSI EFKDKIKNVG
101: ASLVKQVANA TNDVAGDGTT CATVLTRAIF AEGCKSVAAG MNAMDLRRGI SMAVDAVVTN LKSKARMIST SEEIAQVGTI SANGEREIGE LIAKAMEKVG
201: KEGVITIQDG KTLFNELEVV EGMKLDRGYT SPYFITNQKT QKCELDDPLI LIHEKKISSI NSIVKVLELA LKRQRPLLIV SEDVESDALA TLILNKLRAG
301: IKVCAIKAPG FGENRKANLQ DLAALTGGEV ITDELGMNLE KVDLSMLGTC KKVTVSKDDT VILDGAGDKK GIEERCEQIR SAIELSTSDY DKEKLQERLA
401: KLSGGVAVLK IGGASEAEVG EKKDRVTDAL NATKAAVEEG ILPGGGVALL YAARELEKLP TANFDQKIGV QIIQNALKTP VYTIASNAGV EGAVIVGKLL
501: EQDNPDLGYD AAKGEYVDMV KAGIIDPLKV IRTALVDAAS VSSLLTTTEA VVVDLPKDES ESGAAGAGMG GMGGMDY

Arabidopsis Description

CPN60Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.