CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59050	Canola	cytosol	81.19	48.52
KXG40202	Sorghum	cytosol	79.21	39.31
CDY32775	Canola	cytosol	16.34	38.82
CDX84697	Canola	mitochondrion	97.52	34.99
CDY17152	Canola	mitochondrion	98.02	34.49
CDY19471	Canola	mitochondrion	98.02	33.39
AT2G33210.1	Thale cress	mitochondrion	95.05	32.82
CDX93002	Canola	mitochondrion	83.17	30.55
PGSC0003DMT400030265	Potato	mitochondrion	83.66	29.39
Os03t0143400-01	Rice	mitochondrion	83.66	29.29
GSMUA_Achr1P11160_001	Banana	mitochondrion	83.66	29.24
Solyc09g091180.2.1	Tomato	extracellular, mitochondrion, nucleus, unclear	83.66	29.19
CDX94835	Canola	mitochondrion	83.17	29.12
Os10t0462900-01	Rice	mitochondrion	82.67	29.09
TraesCS4A01G409100.1	Wheat	mitochondrion	82.67	28.99
Zm00001d032789_P001	Maize	plastid	82.18	28.82
Solyc05g053470.2.1	Tomato	plastid	81.68	28.8
PGSC0003DMT400069855	Potato	mitochondrion	81.68	28.8
Zm00001d014090_P002	Maize	mitochondrion	82.18	28.77
EER94121	Sorghum	mitochondrion	82.18	28.77
GSMUA_Achr10P...	Banana	mitochondrion	81.68	28.7
TraesCS4B01G307700.1	Wheat	mitochondrion	81.68	28.65
TraesCS1D01G144000.1	Wheat	mitochondrion	81.19	28.57
TraesCS1A01G145000.1	Wheat	mitochondrion	81.19	28.57
TraesCS1B01G162300.1	Wheat	mitochondrion	81.19	28.57
HORVU4Hr1G078820.3	Barley	plastid	82.67	26.47
CDY37741	Canola	mitochondrion	77.23	25.53
TraesCS4D01G305900.1	Wheat	golgi	82.18	25.23
HORVU1Hr1G038680.8	Barley	mitochondrion	82.18	24.81
CDY68896	Canola	cytosol	41.09	24.63
CDY10302	Canola	extracellular	7.92	24.62
CDY66712	Canola	mitochondrion	71.78	24.05
TraesCS4B01G266200.1	Wheat	cytosol	47.52	23.13
CDX82514	Canola	mitochondrion	65.35	23.08
CDX75733	Canola	mitochondrion	64.85	22.9
CDX72433	Canola	endoplasmic reticulum	29.21	18.67
CDY11918	Canola	plastid	49.51	16.81
CDY32855	Canola	plastid	49.01	16.67
CDX75715	Canola	cytosol	45.54	16.34
CDY36809	Canola	plastid	49.01	16.31
CDX75713	Canola	plastid	47.03	16.02
CDX82537	Canola	plastid	46.53	16.01
CDY56079	Canola	plastid	10.4	15.67
CDY08245	Canola	plastid	46.53	15.67
CDY26100	Canola	plastid	47.52	15.29
CDX83280	Canola	plastid	41.09	14.26
CDY31190	Canola	plastid	41.09	14.16
CDY04527	Canola	plastid	41.58	14.09
CDY30514	Canola	plastid	40.59	14.02
CDY02438	Canola	cytosol	48.02	13.92
CDY56074	Canola	plastid	32.18	13.68
CDX86994	Canola	mitochondrion, plastid	47.52	13.68
CDY02601	Canola	plastid	39.11	13.67
CDY66193	Canola	plastid	40.59	13.51
CDY20555	Canola	plastid	40.59	13.51
CDY47184	Canola	plastid	38.61	13.49
CDY23605	Canola	cytosol	28.71	13.36
CDX77147	Canola	plastid	40.59	13.18
CDY10557	Canola	endoplasmic reticulum, plastid	48.02	11.7
CDY43988	Canola	cytosol	28.71	11.28
CDX71396	Canola	plastid	27.23	10.4
HORVU4Hr1G071510.2	Barley	cytosol	36.14	10.25
CDX85007	Canola	cytosol, plastid	44.06	8.86
GSMUA_Achr10P...	Banana	cytosol	2.97	4.35
CDY40825	Canola	endoplasmic reticulum, vacuole	1.98	1.88
CDY31193	Canola	plastid	1.98	1.69
CDY59049	Canola	mitochondrion	1.49	1.38
CDY72107	Canola	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.10.560.10	Gene3D:3.30.260.10	Gene3D:3.50.7.10	MapMan:35.1	GO:A0A078CWL5	EnsemblPlants:CDX79518
ProteinID:CDX79518	ProteinID:CDX79518.1	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_Cpn60_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00132268001
InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	PFAM:PF00118	PRINTS:PR00304
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
UniParc:UPI0004EE7D0D	SEG:seg	:	:	:	:

Description

BnaC03g18540D

Coordinates

chrLK031818:-:478712..479988

Molecular Weight (calculated)

20566.6 Da

IEP (calculated)

4.311

GRAVY (calculated)

0.016

Length

202 amino acids

Sequence
(BLAST)

001: MVEASESDYD KEKLQERLAK LSGGVAVLKI GGASESEVGE KKDRVTDALN ATKAAVEEGI VPGGGVALLY ASKELEKLST ANFDQKIGVQ IIQNALKTPV
101: YTIASNAGVE GAVIVGKLLE SDNPDLGYDA AKGEYVDMVK SGIIDPVKVI RTALVDAASV SSLLTTTEAV VTEIPTKEDA SPAMGGGGGG MGGMGGMGGM
201: GF

Best Arabidopsis Sequence Match ( AT2G33210.1 )
(BLAST)

001: MYRLVSNVAS KARIARKCTS QIGSRLNSTR NYAAKDIRFG VEARALMLRG VEDLADAVKV TMGPKGRNVI IEQSWGAPKV TKDGVTVAKS IEFKDRIKNV
101: GASLVKQVAN ATNDVAGDGT TCATVLTRAI FTEGCKSVAA GMNAMDLRRG IKLAVDTVVT NLQSRARMIS TSEEIAQVGT ISANGDREIG ELIAKAMETV
201: GKEGVITIQD GKTLFNELEV VEGMKIDRGY ISPYFITNPK TQKCELEDPL ILIHEKKISN INAMVKVLEL ALKKQRPLLI VAEDVESDAL ATLILNKLRA
301: NIKVCAVKAP GFGENRKANL HDLAALTGAQ VITEELGMNL DNIDLSMFGN CKKVTVSKDD TVVLDGAGDK QAIGERCEQI RSMVEASTSD YDKEKLQERL
401: AKLSGGVAVL KIGGASETEV SEKKDRVTDA LNATKAAVEE GIVPGGGVAL LYASKELEKL STANFDQKIG VQIIQNALKT PVYTIASNAG VEGAVVVGKL
501: LEQDNPDLGY DAAKGEYVDM IKAGIIDPLK VIRTALVDAA SVSSLLTTTE AVVTEIPTKE VASPGMGGGG MGGMGGMGGM GGMGF

Arabidopsis Description

HSP60-2Chaperonin CPN60-like 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L7B5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.