CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY11931
CDY32789
CDY36796
CDY46579

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13860.1	CDY11931	AT5G56360.1	21798944
AT3G13860.1	CDY32789	AT5G56360.1	21798944
AT3G13860.1	CDY36796	AT5G56360.1	21798944
AT3G13860.1	CDY46579	AT5G56360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82514	Canola	mitochondrion	99.3	99.3
AT3G13860.1	Thale cress	mitochondrion	94.06	94.06
PGSC0003DMT400006642	Potato	cytosol	73.08	81.8
Solyc03g121640.2.1	Tomato	plastid	78.85	78.71
KRH47114	Soybean	mitochondrion	78.85	78.57
KRH44140	Soybean	mitochondrion	78.67	78.4
VIT_09s0002g02240.t01	Wine grape	mitochondrion	74.65	77.5
GSMUA_Achr7P24090_001	Banana	cytosol	68.36	73.77
CDY72107	Canola	mitochondrion	38.11	71.01
CDX94835	Canola	mitochondrion	70.8	70.19
CDX93002	Canola	mitochondrion	67.31	70.0
EES19881	Sorghum	mitochondrion	70.28	69.19
Zm00001d038857_P001	Maize	mitochondrion	70.1	69.14
TraesCS1D01G365800.1	Wheat	mitochondrion	69.58	68.86
Os05t0540300-01	Rice	mitochondrion	69.93	68.85
HORVU1Hr1G079910.1	Barley	mitochondrion, plasma membrane	69.76	68.67
TraesCS1A01G361400.1	Wheat	mitochondrion	69.41	68.57
TraesCS1B01G378000.1	Wheat	mitochondrion	69.58	68.27
CDX84697	Canola	mitochondrion	66.96	68.03
CDY17152	Canola	mitochondrion	66.08	65.85
CDY19471	Canola	mitochondrion	68.01	65.6
CDX79518	Canola	cytosol	22.9	64.85
CDY59049	Canola	mitochondrion	24.48	64.22
CDY59050	Canola	cytosol	37.76	63.91
CDY66712	Canola	mitochondrion	54.9	52.07
CDY37741	Canola	mitochondrion	54.55	51.06
CDX75713	Canola	plastid	43.71	42.16
CDX82537	Canola	plastid	43.18	42.08
CDX75715	Canola	cytosol	40.73	41.39
CDY68896	Canola	cytosol	24.3	41.25
CDY11918	Canola	plastid	42.83	41.18
CDY32855	Canola	plastid	42.48	40.91
CDY36809	Canola	plastid	42.48	40.03
CDY08245	Canola	plastid	41.96	40.0
CDX83280	Canola	plastid	39.86	39.18
CDY30514	Canola	plastid	40.03	39.15
CDY31190	Canola	plastid	39.69	38.74
CDY04527	Canola	plastid	40.03	38.42
CDY26100	Canola	plastid	42.13	38.38
CDY20555	Canola	plastid	40.03	37.73
CDX72433	Canola	endoplasmic reticulum	20.8	37.66
CDX71396	Canola	plastid	34.79	37.62
CDY66193	Canola	plastid	39.69	37.4
CDX77147	Canola	plastid	40.21	36.98
CDY23605	Canola	cytosol	27.97	36.87
CDY02438	Canola	cytosol	42.48	34.86
CDY02601	Canola	plastid	35.14	34.78
CDY47184	Canola	plastid	34.97	34.6
CDY56074	Canola	plastid	27.27	32.84
CDY31193	Canola	plastid	12.94	31.22
CDY43988	Canola	cytosol	27.97	31.13
CDY32775	Canola	cytosol	4.37	29.41
CDY10557	Canola	endoplasmic reticulum, plastid	42.48	29.31
CDY40825	Canola	endoplasmic reticulum, vacuole	9.62	25.82
CDX86994	Canola	mitochondrion, plastid	29.55	24.07
CDY10302	Canola	extracellular	2.62	23.08
CDY56079	Canola	plastid	5.07	21.64
CDX85007	Canola	cytosol, plastid	24.3	13.84

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	GO:A0A078CKY3	EnsemblPlants:CDX75733
ProteinID:CDX75733	ProteinID:CDX75733.1	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0042026
InterPro:GROEL-like_equatorial_sf	EnsemblPlantsGene:GSBRNA2T00123655001	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85
SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0004EEA181
SEG:seg	:	:	:	:	:

Description

BnaC03g38160D

Coordinates

chrLK031805:-:267755..271245

Molecular Weight (calculated)

60553.2 Da

IEP (calculated)

6.149

GRAVY (calculated)

-0.050

Length

572 amino acids

Sequence
(BLAST)

001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YVAKDISFGV GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGAPKIT KDGVTVAKSI SFESKAKNMG
101: AELVKQVANA TNKVAGDGTT CATVLTQAIL TEGCKSVAAG VNVMDLRSGI NMAINAVVCD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLENELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKVSDM NSLLKVLEAA VKSSRPLLVV AEDVESDALA MLILNKHHAG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLTLD KIRPELLGTA KKVTISRDDT LILHGGGDKK LIEERCEELR SANEKSTSTF DKEKTQERLS
401: KLSGGVAVFK VGGASEAEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLE TQNEDQRRGV QIVQNALKAP ALTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD ASKGSYVDMV KAGIIDPVKV IKTALTDAAS VSLLLTTTEA SVLVKAEEKT QKHVPDMAGM GM

Best Arabidopsis Sequence Match ( AT3G13860.1 )
(BLAST)

001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YAAKDISFGI GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGGPKIT KDGVTVAKSI SFQAKAKNIG
101: AELVKQVASA TNKVAGDGTT CATVLTQAIL IEGCKSVAAG VNVMDLRVGI NMAIAAVVSD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLDNELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKISDI NSLLKVLEAA VKSSRPLLIV AEDVESDALA MLILNKHHGG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLSLE KIRPELLGTA KKVTVTRDDT IILHGGGDKK LIEERCEELR SANEKSTSTF DQEKTQERLS
401: KLSGGVAVFK VGGASESEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLQ TENEDQRRGV QIVQNALKAP AFTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD AAKGKYVDMV KAGIIDPVKV IRTALTDAAS VSLLLTTTEA SVLVKADENT PNHVPDMASM GM

Arabidopsis Description

HSP60-3AChaperonin CPN60-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93ZM7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.