Factsheet for HORVU1Hr1G079910.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G039400.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13860.1	HORVU3Hr1G039400.5	AT5G56360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G365800.1	Wheat	mitochondrion	96.9	97.4
TraesCS1A01G361400.1	Wheat	mitochondrion	96.73	97.06
TraesCS1B01G378000.1	Wheat	mitochondrion	96.73	96.4
EES19881	Sorghum	mitochondrion	87.95	87.95
Zm00001d038857_P001	Maize	mitochondrion	87.44	87.59
Os05t0540300-01	Rice	mitochondrion	87.44	87.44
GSMUA_Achr7P24090_001	Banana	cytosol	68.16	74.72
PGSC0003DMT400006642	Potato	cytosol	65.58	74.56
VIT_09s0002g02240.t01	Wine grape	mitochondrion	68.85	72.6
Solyc03g121640.2.1	Tomato	plastid	69.54	70.51
CDX82514	Canola	mitochondrion	68.85	69.93
Bra001524.1-P	Field mustard	mitochondrion	68.67	69.76
CDX75733	Canola	mitochondrion	68.67	69.76
KRH47114	Soybean	mitochondrion	68.85	69.69
KRH44140	Soybean	mitochondrion	68.85	69.69
AT3G13860.1	Thale cress	mitochondrion	68.16	69.23
HORVU4Hr1G078820.3	Barley	plastid	67.64	62.28
HORVU1Hr1G038680.8	Barley	mitochondrion	67.81	58.89
HORVU7Hr1G006490.2	Barley	cytosol	42.51	44.58
HORVU5Hr1G074160.1	Barley	cytosol	14.8	44.1
HORVU2Hr1G107410.2	Barley	cytosol	14.97	43.5
HORVU4Hr1G076680.1	Barley	cytosol	14.8	43.43
HORVU6Hr1G005220.3	Barley	plastid	43.2	41.97
HORVU5Hr1G125130.1	Barley	plastid	40.79	40.37
HORVU2Hr1G109400.1	Barley	cytosol	6.37	40.22
HORVU2Hr1G011340.1	Barley	cytosol	11.36	40.0
HORVU6Hr1G000180.2	Barley	plastid	42.51	37.94
HORVU2Hr1G007840.7	Barley	mitochondrion, plastid	39.93	37.18
HORVU0Hr1G038830.17	Barley	plastid	37.52	36.95
HORVU2Hr1G077410.18	Barley	plastid	37.01	36.2
HORVU4Hr1G066820.2	Barley	cytosol	14.63	36.17
HORVU4Hr1G071510.2	Barley	cytosol	36.49	29.78

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60
ncoils:Coil	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005773
GO:GO:0005774	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0042026
GO:GO:0046686	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	EnsemblPlantsGene:HORVU1Hr1G079910	EnsemblPlants:HORVU1Hr1G079910.1	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	UniProt:M0YB80	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298
ScanProsite:PS00296	PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI000296411B	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr1H:-:523971479..523976840

Molecular Weight (calculated)

61370.1 Da

IEP (calculated)

6.697

GRAVY (calculated)

-0.099

Length

581 amino acids

Sequence
(BLAST)

001: MYRAAAAAIS RSSSSALRRH LARGGGGGGE QRQWARGYAA KEVTFGVGAR AAMLRGVNDL ADAVKVTMGP KGRNVVIERP NRSPKVTKDG VTVAKSIEFE
101: DSAKNVGASL VKQVADATNK AAGDGTTCAT VLTQAILTEG CKAVAAGVNV MDLRNGINKA ISAVTAHLKS KAWMIDSPDE INQVATISAN GEKEIGDLIS
201: KAMGIVGKDG VITIADGKTL DNELEAVQGM KLTRGYISPY FVTDQKTQKC ELKNPLILIH DKKISSMNSL LPALQISIQN NRPLLIFAED VEGEALSMLV
301: LNKHRAGLKI CAVKAPGFGE NRRANLDDMA ILTGGQVISE EQGLDLDKVE LQMLGTAKKV TVSLDDTIIL DGGGERQQIE ERCQQLRESL ENNTAMFDKE
401: KAQERLSKLS GGVAVLKIGG ASEAEVGEKK DRVTDALNAA RAAVEEGIVP GGGVALLYAA KELDQISTSH EDERIGVQII KNALKAPLMT IAANAGVDGA
501: IVIGKLLEQD NLSLGYDAAK GEYVDMIKAG IIDPVKVIRT ALQDAASVSL LMTTTEAAVA ELPSTKARIA SRMPDMSGMG F

Best Arabidopsis Sequence Match ( AT3G13860.1 )
(BLAST)

001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YAAKDISFGI GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGGPKIT KDGVTVAKSI SFQAKAKNIG
101: AELVKQVASA TNKVAGDGTT CATVLTQAIL IEGCKSVAAG VNVMDLRVGI NMAIAAVVSD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLDNELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKISDI NSLLKVLEAA VKSSRPLLIV AEDVESDALA MLILNKHHGG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLSLE KIRPELLGTA KKVTVTRDDT IILHGGGDKK LIEERCEELR SANEKSTSTF DQEKTQERLS
401: KLSGGVAVFK VGGASESEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLQ TENEDQRRGV QIVQNALKAP AFTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD AAKGKYVDMV KAGIIDPVKV IRTALTDAAS VSLLLTTTEA SVLVKADENT PNHVPDMASM GM

Arabidopsis Description

HSP60-3AChaperonin CPN60-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93ZM7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.