CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG32260

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13860.1	KXG32260	AT5G56360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038857_P001	Maize	mitochondrion	97.25	97.41
Os05t0540300-01	Rice	mitochondrion	89.16	89.16
TraesCS1D01G365800.1	Wheat	mitochondrion	88.12	88.58
TraesCS1A01G361400.1	Wheat	mitochondrion	88.12	88.43
TraesCS1B01G378000.1	Wheat	mitochondrion	88.3	87.99
HORVU1Hr1G079910.1	Barley	mitochondrion, plasma membrane	87.95	87.95
PGSC0003DMT400006642	Potato	cytosol	66.78	75.93
GSMUA_Achr7P24090_001	Banana	cytosol	69.19	75.85
VIT_09s0002g02240.t01	Wine grape	mitochondrion	69.02	72.78
Solyc03g121640.2.1	Tomato	plastid	71.08	72.08
CDX75733	Canola	mitochondrion	69.19	70.28
CDX82514	Canola	mitochondrion	69.19	70.28
KRH44140	Soybean	mitochondrion	69.36	70.21
Bra001524.1-P	Field mustard	mitochondrion	69.02	70.1
KRH47114	Soybean	mitochondrion	69.19	70.03
AT3G13860.1	Thale cress	mitochondrion	68.85	69.93
EER94121	Sorghum	mitochondrion	67.99	68.46
KXG40202	Sorghum	cytosol	47.33	67.57
KXG29249	Sorghum	plastid	44.92	43.21
EER89076	Sorghum	plastid	42.17	42.31
EES19317	Sorghum	plastid	39.76	40.03
EER90466	Sorghum	plastid	39.93	40.0
EER96340	Sorghum	plastid	37.69	37.44

Protein Annotations

Gene3D:1.10.560.10	MapMan:19.1.7.1	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:8061075	UniProt:C5YUU6
InterPro:Chaperonin_Cpn60_CS	InterPro:Chaprnin_Cpn60	ncoils:Coil	InterPro:Cpn60/TCP-1	EnsemblPlants:EES19881	ProteinID:EES19881
ProteinID:EES19881.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005773
GO:GO:0005774	GO:GO:0005829	GO:GO:0006457	GO:GO:0006458	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0042026	GO:GO:0044183	GO:GO:0045041
GO:GO:0046686	GO:GO:0051082	GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409
InterPro:IPR027410	InterPro:IPR027413	HAMAP:MF_00600	PFAM:PF00118	PRINTS:PR00298	ScanProsite:PS00296
PANTHER:PTHR11353	PANTHER:PTHR11353:SF85	EnsemblPlantsGene:SORBI_3009G214100	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849
unigene:Sbi.4011	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02348	UniParc:UPI0001A89178	RefSeq:XP_002441451.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:55929857..55935603

Molecular Weight (calculated)

61407.3 Da

IEP (calculated)

6.698

GRAVY (calculated)

-0.115

Length

581 amino acids

Sequence
(BLAST)

001: MYRAAAAAIS RSSSVLRRQL PRGAGGEPPR LLARGYASTA KEVSFGVGAR AAMLQGVNDL ADAVKVTMGP KGRTVIIEGS YKGPKVTKDG VTVAKSVEFE
101: DSAKNVGANL VKQVADATNK AAGDGTTCAT VLTQAILTEG CKAVAAGVNV MDLRNGINKA INATTAHLKS KAWKINSPEE INQVATISAN GEKEIGDLIS
201: KAMEKVGKDG VITIVDGKTL DNELEAVQGM KLSRGYISHY FVTDQKTQKC EMENPLILIH DKKISNMDSL LPALEISIKN RKPLLIVAED VDGDALSMLV
301: LNKHRAGLKV CAVKAPGFGE NRRHNLDDMA VMTGGEVISE ERGLDLGKVQ LQMLGTAKKV TVSLDDTIIL DGGGDKQQIE ERCQQLRESI DTSTAVFDKE
401: KAQERLSKLS GGVAVLKIGG ASEAEVGEKK DRVTDALNAA RAAVEEGIVP GGGVALLYAT KELDKISTSN EDEKIGVQII KNSLKAPLMT IAANAGIDGA
501: IVIGKLIEQE DLSLGYDAAK GEYVDMIKAG IIDPVKVIRT ALQDAASVSL LMTTTEAAVS ELPATKARIA SRMPQMSGMD F

Best Arabidopsis Sequence Match ( AT3G13860.1 )
(BLAST)

001: MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YAAKDISFGI GARAAMLQGV SEVAEAVKVT MGPKGRNVII ESSYGGPKIT KDGVTVAKSI SFQAKAKNIG
101: AELVKQVASA TNKVAGDGTT CATVLTQAIL IEGCKSVAAG VNVMDLRVGI NMAIAAVVSD LKSRAVMIST PEEITQVATI SANGEREIGE LIARAMEKVG
201: KEGVITVADG NTLDNELEVV EGMKLARGYI SPYFITDEKT QKCELENPII LIHEKKISDI NSLLKVLEAA VKSSRPLLIV AEDVESDALA MLILNKHHGG
301: LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLSLE KIRPELLGTA KKVTVTRDDT IILHGGGDKK LIEERCEELR SANEKSTSTF DQEKTQERLS
401: KLSGGVAVFK VGGASESEVG ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLQ TENEDQRRGV QIVQNALKAP AFTIAANAGY DGSLVVGKLL
501: EQDDCNFGFD AAKGKYVDMV KAGIIDPVKV IRTALTDAAS VSLLLTTTEA SVLVKADENT PNHVPDMASM GM

Arabidopsis Description

HSP60-3AChaperonin CPN60-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93ZM7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.