CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89530
EES06399
EES07297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56360.1	EER89530	AT1G68060.1	21798944
AT5G56360.1	EES07297	AT1G68060.1	21798944
AT5G56360.1	EES06399	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G218600.2	Wheat	golgi	76.31	77.19
TraesCS3D01G192900.1	Wheat	endoplasmic reticulum	75.98	76.86
TraesCS3A01G189400.3	Wheat	endoplasmic reticulum	75.82	76.69
Os01t0276800-01	Rice	endoplasmic reticulum	75.82	75.57
HORVU3Hr1G039400.5	Barley	endoplasmic reticulum	75.65	75.16
Zm00001d040449_P001	Maize	endoplasmic reticulum	34.97	72.54
Zm00001d008236_P004	Maize	endoplasmic reticulum	85.29	72.1
GSMUA_Achr10P...	Banana	endoplasmic reticulum	24.35	53.99
KRH50502	Soybean	endoplasmic reticulum	53.27	51.83
KRG89462	Soybean	endoplasmic reticulum	52.61	50.55
VIT_06s0004g00140.t01	Wine grape	endoplasmic reticulum	50.98	48.9
CDY46579	Canola	endoplasmic reticulum	50.98	48.45
GSMUA_Achr5P27690_001	Banana	endoplasmic reticulum	53.27	47.87
CDY32789	Canola	endoplasmic reticulum	50.0	47.74
AT5G56360.1	Thale cress	endoplasmic reticulum	50.33	47.6
Bra002821.1-P	Field mustard	endoplasmic reticulum	49.84	47.58
CDY11931	Canola	endoplasmic reticulum	50.33	47.17
Bra028933.1-P	Field mustard	endoplasmic reticulum	49.18	46.24
CDY36796	Canola	endoplasmic reticulum	49.02	46.08
PGSC0003DMT400011814	Potato	endoplasmic reticulum	46.41	44.94
Solyc12g099660.1.1	Tomato	unclear	46.57	44.67
OQU87548	Sorghum	plasma membrane	13.24	36.65

Protein Annotations

MapMan:18.1.1.6.2.2	Gene3D:2.70.130.10	Gene3D:4.10.400.10	UniProt:A0A1B6Q2X0	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006491	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0019538
GO:GO:0042742	InterPro:Glucosidase_2_bsu	InterPro:IPR009011	EnsemblPlants:KXG32260	ProteinID:KXG32260	ProteinID:KXG32260.1
InterPro:Man6P_isomerase_rcpt-bd_dom_sf	PFAM:PF12999	PFAM:PF13015	InterPro:PRKCSH	InterPro:PRKCSH_N	PANTHER:PTHR12630
PANTHER:PTHR12630:SF10	EnsemblPlantsGene:SORBI_3003G130900	SUPFAM:SSF50911	SignalP:SignalP-noTM	UniParc:UPI0001C80AA2	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:12254255..12260463

Molecular Weight (calculated)

68858.7 Da

IEP (calculated)

4.537

GRAVY (calculated)

-1.027

Length

612 amino acids

Sequence
(BLAST)

001: MRLLLVGALL LCAAAAVESK PPLDTLGIPP QDEAYYRGGV IKCRDGSGRF SQDQLNDDFC DCPDGTDEPG TSACPEAKFY CKNAGHTPVT IFSSRVNDGI
101: CDCCDGSDEY DSNVTCKNTC WEAGKAAREK LKKKVATYKN GVVIRKQEVE RAKEAFAKDE SELAKLKGEE KILQGLVDKL KEQKKLIEKA EEEERLKKEK
201: EEKRIKEEAE KQAAVEKGAP DASWDVDSKE TQDHVQEDEN KVAEQHDGHA TDHDNHVTES GASVEQHGSV SKDGISAEAG TVDELPQKES AASTLEKDLS
301: SDNPEGLSRE ELGRMVASRW TGESVNEVSK DDKKGHKDEQ EIPEPAEEAL EDEIEIPEPA EESYGGYHSE VEDDRHKYED EEFDHESEDE YVDDHDDHVE
401: SYRSDDNQKA DHHSDLTEPG HASWLDKIQQ TVQNVFQKFN FFKTPVDLSE ASRVRKEYDD ASSKLSKIQS KISSLAEKLK HDFGKDKEFY SFYDQCFETK
501: EGKYTYKVCA YKKATQAEGH SSTNLGRWDK FEESYRVMHF SNGDKCWNGP DRSLKVRLRC GLSNELNDVD EPSRCEYVAV LSTPAVCVED KLKELQNKLD
601: AMSSKQPGHD EL

Best Arabidopsis Sequence Match ( AT5G56360.1 )
(BLAST)

001: MRVVVISSFV SVSLQLSFLL LLASAIRSSS SPPNDPFLGI SPQDEKYYKS SSEIKCKDGS KKFTKAQLND DFCDCSDGTD EPGTSACPTG KFYCRNAGHS
101: PVILFSSRVN DGICDCCDGS DEYDGHVSCQ NTCWEAGKAA RENLKKKIET YNQGLVIRRQ EIEQAKVGLE KDAAELKKLK SEQKILKGLV DQLKDRKEQI
201: EKVEEKERLQ KEKEEKEKKE AELAAQQGKG DAEEKTDDSE KVEESSHDEG TPAVSQHDET THHDEIGNYK DYPSDEEPAA EGEPTSILDE ATHTNPADEH
301: VVERKEESTS SEDSSSPTDE SQNDGSAEKE ESDEVKKVED FVTEKKEELS KEELGRLVAS RWTGEKSDKP TEADDIPKAD DQENHEHTPI TAHEADEDDG
401: FVSDGDEDTS DDGKYSDHEP EDDSYEEEYR HDSSSSYKSD ADDDVDFSET TSNPTWLEKI QKTVKNILLA VNLFQTTPVD KSEADRVRKE YDESSSKLNK
501: IQSRISSLEK KLKQDFGPEK EFYSFHGRCF ESKQGKYTYK VCAYKEATQE EGYSKTRLGE WDKFENSYQF MSYTNGEKCW NGPDRSLKVK LRCGLKNELM
601: DVDEPSRCEY AAILSTPARC LEDKLKELQQ KLEKLMNQDK PQNHDEL

Arabidopsis Description

PSL4Glucosidase 2 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9FM96]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.