Factsheet for Zm00001d008236_P004

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

mitochondrion 1
endoplasmic reticulum 6
extracellular 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017961_P003
Zm00001d037291_P001
Zm00001d044724_P001
Zm00001d053726_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56360.1	Zm00001d017961_P003	AT1G68060.1	21798944
AT5G56360.1	Zm00001d037291_P001	AT1G68060.1	21798944
AT5G56360.1	Zm00001d044724_P001	AT1G68060.1	21798944
AT5G56360.1	Zm00001d053726_P001	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32260	Sorghum	endoplasmic reticulum	72.1	85.29
TraesCS3D01G192900.1	Wheat	endoplasmic reticulum	60.22	72.07
TraesCS3B01G218600.2	Wheat	golgi	60.08	71.9
TraesCS3A01G189400.3	Wheat	endoplasmic reticulum	59.94	71.74
Os01t0276800-01	Rice	endoplasmic reticulum	59.67	70.36
Zm00001d040449_P001	Maize	endoplasmic reticulum	28.59	70.17
HORVU3Hr1G039400.5	Barley	endoplasmic reticulum	59.67	70.13
Zm00001d040448_P001	Maize	mitochondrion	36.33	66.41
GSMUA_Achr10P...	Banana	endoplasmic reticulum	19.2	50.36
KRH50502	Soybean	endoplasmic reticulum	40.75	46.9
KRG89462	Soybean	endoplasmic reticulum	40.19	45.68
GSMUA_Achr5P27690_001	Banana	endoplasmic reticulum	41.71	44.35
VIT_06s0004g00140.t01	Wine grape	endoplasmic reticulum	38.81	44.04
CDY46579	Canola	endoplasmic reticulum	38.95	43.79
Bra002821.1-P	Field mustard	endoplasmic reticulum	38.12	43.06
AT5G56360.1	Thale cress	endoplasmic reticulum	38.4	42.97
CDY32789	Canola	endoplasmic reticulum	37.98	42.9
CDY11931	Canola	endoplasmic reticulum	38.54	42.73
Bra028933.1-P	Field mustard	endoplasmic reticulum	37.71	41.94
CDY36796	Canola	endoplasmic reticulum	37.57	41.78
PGSC0003DMT400011814	Potato	endoplasmic reticulum	35.08	40.19
Solyc12g099660.1.1	Tomato	unclear	35.08	39.81
Zm00001d012737_P001	Maize	endoplasmic reticulum	10.77	32.1

Protein Annotations

EntrezGene:100279808	MapMan:18.1.1.6.2.2	Gene3D:2.70.130.10	Gene3D:4.10.400.10	UniProt:A0A1D6FB31	ProteinID:AQK89271.1
ncoils:Coil	GO:GO:0006491	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
InterPro:Glucosidase_2_bsu	InterPro:IPR009011	InterPro:Man6P_isomerase_rcpt-bd_dom_sf	PFAM:PF12999	PFAM:PF13015	InterPro:PRKCSH
InterPro:PRKCSH_N	PANTHER:PTHR12630	PANTHER:PTHR12630:SF10	SUPFAM:SSF50911	SignalP:SignalP-noTM	UniParc:UPI00084462B9
EnsemblPlantsGene:Zm00001d008236	EnsemblPlants:Zm00001d008236_P004	EnsemblPlants:Zm00001d008236_T004	SEG:seg	:	:

Description

Glucosidase 2 subunit beta

Coordinates

chr8:+:2198415..2206575

Molecular Weight (calculated)

82277.8 Da

IEP (calculated)

4.780

GRAVY (calculated)

-0.746

Length

724 amino acids

Sequence
(BLAST)

001: MRLLLVGALL LCATAAVESK PPLDTLGIPP QDEAYYRGGV IKCRDGSGRF SREQLNDDFC DCPDGTDEPG TSACPEAKFY CKNAGHTPVT IFSSRVNDGI
101: CDCCDGSDEY DSNITCKNTC WEAGKAAREK LKKKVATYKS GVVIRNQEVE RAKEAYAKDE AELAKLKGEE KILQGLVDKL KEQKRLIEKA EEEERLRKEK
201: EEKRIKEAEK QAADEKGTPD ASPDVDSKET HDHVQEDENK VGISFCFSVM LIIHQTTVAE EHDVHATDHD NHATDHDNHA AESGASVEQQ GSVNKDDISV
301: EAGTLDELLH KESAVPTLEK QLILGRYVDF MSKVYEACFA EFQDHSSDNP EGLSREELGR MVASRWTGES VSEVSKDDKK GHEDEQEIPE PAKEALEDEL
401: EIPEPAEENY DGYHSEVEDD RHKYEDEEFD HESEDEYVDD HDEHVESYKS DDDQKDLTEP GHASWLDKIQ QTVQNVFQKF NFFRTPVDLS EASRVRKEYD
501: DANSKLSKIQ SKISNLAEKL KHDFDVIFPL QKLYQSIVLF FHRLAIVDIL AKTRSSIPFM ISALRPRKES ILTRSVHIRK HHRLKGTVPP TWGMLLVLLS
601: LLKSHNFLFV VSEYFYSGFK KYCSLGNDSP YSFCCIYKRW DKFEESYRVM HFSGGDKCWN GPDRSLKVRL RCGLSNELND VDEPSRCEYV AVLSTPALCV
701: EEKLKELQNK LDAMSSKQPG HDEL

Best Arabidopsis Sequence Match ( AT2G42390.1 )
(BLAST)

001: MLLQCVVLCS SLAVVVISVA STSPLVGVHP LDEKYFDSDV IKCKDGSKSF TRDRLNDNFC DCLDGTDEPG TSACPNGKFY CRNIGSSPKF VYSSRVNDRI
101: CDCCDGSDEY ESSIHCPNTC IMGGNVNYIY KPRANLKSIH LQLGSTPHPK EFYTIGNLQD MVKNLQGMKL VFALQMVFIG FLVILWMLRS RARSKRRRYL
201: LKNVPPINRS AN

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLC0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.