Factsheet for GSMUA_Achr5P27690_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 6
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56360.1	GSMUA_AchrUn_...	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	endoplasmic reticulum	24.52	60.51
TraesCS3B01G218600.2	Wheat	golgi	49.63	55.87
TraesCS3D01G192900.1	Wheat	endoplasmic reticulum	49.19	55.37
TraesCS3A01G189400.3	Wheat	endoplasmic reticulum	48.9	55.04
HORVU3Hr1G039400.5	Barley	endoplasmic reticulum	49.34	54.55
Os01t0276800-01	Rice	endoplasmic reticulum	48.6	53.91
KXG32260	Sorghum	endoplasmic reticulum	47.87	53.27
GSMUA_Achr10P...	Banana	nucleus	24.67	53.16
Zm00001d040449_P001	Maize	endoplasmic reticulum	21.59	49.83
KRH50502	Soybean	endoplasmic reticulum	45.67	49.44
VIT_06s0004g00140.t01	Wine grape	endoplasmic reticulum	46.11	49.22
KRG89462	Soybean	endoplasmic reticulum	45.81	48.98
CDY32789	Canola	endoplasmic reticulum	44.79	47.58
AT5G56360.1	Thale cress	endoplasmic reticulum	44.93	47.3
Bra002821.1-P	Field mustard	endoplasmic reticulum	44.35	47.11
Solyc12g099660.1.1	Tomato	unclear	43.76	46.71
PGSC0003DMT400011814	Potato	endoplasmic reticulum	43.32	46.68
CDY46579	Canola	endoplasmic reticulum	43.76	46.27
Bra028933.1-P	Field mustard	endoplasmic reticulum	43.47	45.47
CDY36796	Canola	endoplasmic reticulum	43.32	45.31
CDY11931	Canola	endoplasmic reticulum	43.17	45.02
Zm00001d008236_P004	Maize	endoplasmic reticulum	44.35	41.71
GSMUA_Achr4P02770_001	Banana	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane	11.31	35.98

Protein Annotations

MapMan:18.1.1.6.2.2	Gene3D:2.70.130.10	Gene3D:4.10.400.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006491	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr5G27690_001	EnsemblPlants:GSMUA_Achr5P27690_001	EnsemblPlants:GSMUA_Achr5T27690_001	InterPro:Glucosidase_2_bsu	InterPro:IPR009011	InterPro:LDL_receptor-like_sf
InterPro:LDrepeatLR_classA_rpt	UniProt:M0T294	InterPro:Man6P_isomerase_rcpt-bd_dom_sf	PFAM:PF12999	PFAM:PF13015	InterPro:PRKCSH
InterPro:PRKCSH_N	PFscan:PS50068	PANTHER:PTHR12630	PANTHER:PTHR12630:SF10	SUPFAM:SSF50911	SUPFAM:SSF57424
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002965366	SEG:seg	:	:

Description

glucosidase II beta subunit-like domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G27690_001]

Coordinates

chr5:-:28151800..28161714

Molecular Weight (calculated)

77945.2 Da

IEP (calculated)

4.862

GRAVY (calculated)

-0.935

Length

681 amino acids

Sequence
(BLAST)

001: MRTHRIRVSI AISCFCLLWV GGFTSLPPRE LLGIAPQDEG YYKSDVIKCK DGSKKFTKQQ LNDEFCDCPD GTDEPGTSAC PEGEFYCRNA GHIPRTIFSS
101: RVNDGVCDCC DGSDEYNGKS NCPNTCWEAG KSAREKLKKK IATHQDGLAI RKQELEKAKQ AFAEDEAELL KLKNEEKILK GLVEKLREHK ERIEKAEEEE
201: RLRKEKEEKK QREAERKSTE QNRPSEESAQ YQSEGTQDTP MEMNSQKFCF SILHIVLHGM LDSGFSCHKV YFPYCSKPWK LEVIHQNKEN MQKILDGNVT
301: LEIGHEPVVP PENEYNSRIE IPAVHNVGQV ADNIGESITS GHGSDDVNNE IPSGHAADQV IKQIHWNVQE HISGNTEGLS REELGRLVAS RWTGEHAEER
401: TNEPNDANGE QEEQNQDFSD SAEEENYDSY NSDNDEDRHK FDDDDIQDVA AEEYGNHVEP DGSYDHDKDY KSEFPVVYFL FVDLTSSGSP SWLDKIKQTV
501: QNIIQAFSFF KSPVDLSVAS RVKKEYDDAS SKLSKIQSRI SGLSEKLKHD FGKEKDFYSF YDRCFENKQN KYIYKVCPFK KASQVEGHSS TQLGRWENFD
601: ESYRVMQFSN GDRCWNGPDR SLKVRLRCGL KDDLADVDEP SRCEYVAILS TPIICLEEKL KELQQKLEDM NKRQPSTHDE L

Best Arabidopsis Sequence Match ( AT5G56360.1 )
(BLAST)

001: MRVVVISSFV SVSLQLSFLL LLASAIRSSS SPPNDPFLGI SPQDEKYYKS SSEIKCKDGS KKFTKAQLND DFCDCSDGTD EPGTSACPTG KFYCRNAGHS
101: PVILFSSRVN DGICDCCDGS DEYDGHVSCQ NTCWEAGKAA RENLKKKIET YNQGLVIRRQ EIEQAKVGLE KDAAELKKLK SEQKILKGLV DQLKDRKEQI
201: EKVEEKERLQ KEKEEKEKKE AELAAQQGKG DAEEKTDDSE KVEESSHDEG TPAVSQHDET THHDEIGNYK DYPSDEEPAA EGEPTSILDE ATHTNPADEH
301: VVERKEESTS SEDSSSPTDE SQNDGSAEKE ESDEVKKVED FVTEKKEELS KEELGRLVAS RWTGEKSDKP TEADDIPKAD DQENHEHTPI TAHEADEDDG
401: FVSDGDEDTS DDGKYSDHEP EDDSYEEEYR HDSSSSYKSD ADDDVDFSET TSNPTWLEKI QKTVKNILLA VNLFQTTPVD KSEADRVRKE YDESSSKLNK
501: IQSRISSLEK KLKQDFGPEK EFYSFHGRCF ESKQGKYTYK VCAYKEATQE EGYSKTRLGE WDKFENSYQF MSYTNGEKCW NGPDRSLKVK LRCGLKNELM
601: DVDEPSRCEY AAILSTPARC LEDKLKELQQ KLEKLMNQDK PQNHDEL

Arabidopsis Description

PSL4Glucosidase 2 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q9FM96]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.